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# Methods needed from other packages
importFrom(stats, confint, fitted, coef, vcov, predict, update, profile,
simulate, residuals, logLik, as.formula, binomial, cov, dbinom,
dmultinom, dnbinom, dnorm, dpois, formula,
glm.fit, integrate, median, model.frame,
model.matrix, model.offset, na.omit, optim, pchisq, plogis,
pnorm, qchisq, qnorm, quantile, rbinom,
reshape, rmultinom, rnbinom, rpois, runif, sd, uniroot,
update.formula, sigma)
importFrom(graphics, plot, hist, abline, axis, lines, points, polygon, segments, title)
importFrom(utils, head, read.csv)
importFrom(grDevices, devAskNewPage, dev.interactive, palette.colors)
importFrom(MASS, mvrnorm)
importFrom(parallel, detectCores, makeCluster, stopCluster, clusterExport,
clusterEvalQ)
importFrom(methods, is, as, new, show, slot, .hasSlot, callGeneric,
callNextMethod, setMethod)
importFrom(lattice, xyplot, levelplot)
importFrom(Rcpp, evalCpp)
# Fitting functions
export(occu, occuFP, occuRN, pcount, pcountOpen, multinomPois, distsamp,
colext, gmultmix, gdistsamp, gpcount, occuPEN, occuPEN_CV, occuMulti,
occuMS, computeMPLElambda, pcount.spHDS, occuTTD, distsampOpen,
multmixOpen, nmixTTD, gdistremoval, goccu, occuCOP)
export(removalPiFun, doublePiFun)
export(makeRemPiFun, makeCrPiFun, makeCrPiFunMb, makeCrPiFunMh)
# S4 classes
exportClasses(unmarkedFit, unmarkedFitOccu, unmarkedFitOccuFP, unmarkedFitDS,
unmarkedFitPCount, unmarkedFitMPois, unmarkedFitPCO,
unmarkedFrameDSO, unmarkedFitDSO,
unmarkedFrameMMO, unmarkedFitMMO,
unmarkedFitOccuMulti,
unmarkedFrame, unmarkedFrameOccu, unmarkedFramePCount,
unmarkedFrameMPois, unmarkedFrameDS, unmarkedMultFrame,
unmarkedFrameGMM, unmarkedFrameGDS, unmarkedFramePCO,
unmarkedFrameGPC, unmarkedEstimate, unmarkedFitList,
unmarkedModSel, unmarkedRanef, unmarkedFrameOccuMulti,
unmarkedFrameOccuMS, unmarkedFrameGDR, unmarkedCrossVal,
unmarkedPostSamples, unmarkedPower, unmarkedPowerList)
# Methods
exportMethods(backTransform, coef, confint, coordinates, fitted, getData,
getP, getFP, getB, getY, head, hessian, linearComb, mle,
modSel, nllFun, numSites, numY, obsCovs, obsNum, "obsCovs<-",
obsToY, "obsToY<-", parboot, plot, hist, predict, profile,
projection, residuals, sampleSize, SE, show, simulate, siteCovs,
"siteCovs<-", summary, update, vcov, yearlySiteCovs,
"yearlySiteCovs<-", "[", smoothed, projected, nonparboot, logLik,
LRT, ranef, bup, crossVal, posteriorSamples, sigma, randomTerms,
optimizePenalty, unmarkedPowerList, plotEffectsData, plotEffects,
getL)
S3method("print", "unmarkedPostSamples")
# Constructors
export(unmarkedEstimate, fitList, mapInfo, unmarkedFrame,
unmarkedFrameOccu, unmarkedFrameOccuFP, unmarkedFramePCount, unmarkedFrameMPois,
unmarkedFrameDS, unmarkedMultFrame, unmarkedFrameGMM,
unmarkedFramePCO, unmarkedFrameGDS, unmarkedFrameGPC, unmarkedFrameOccuMulti,
unmarkedFrameOccuMS, unmarkedFrameOccuTTD, unmarkedFrameDSO,
unmarkedFrameMMO, unmarkedFrameGDR, unmarkedFrameGOccu,
unmarkedFrameOccuCOP)
# Formatting
export(csvToUMF, formatLong, formatWide, formatMult, formatDistData)
# Misc
export(imputeMissing, gxhn, gxexp, gxhaz, dxhn, dxexp, dxhaz, drhn, drexp,
drhaz, grhn, grexp, grhaz, sight2perpdist, lambda2psi, SSE, vif, powerAnalysis,
shinyPower)
useDynLib("unmarked", .registration=TRUE)
useDynLib(unmarked_TMBExports)
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