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# jagsUI 1.6.1
* Extensive refactoring of internal code
* Don't drop output dimensions when only one parameter saved
* Summary method now returns the summary matrix
* Add tests
* Add vignette
# jagsUI 1.5.2
* Remove View function due to problematic interactions with RStudio
* Improvements to traceplot and densityplot
* Make sure output is reproducible when parallel=FALSE
* Minor bugfixes
# jagsUI 1.5.1
* Fix issue when chains adapted for different numbers of iterations
* Fix crash when DIC was requested but JAGS couldn't calculate it
* Stop auto-converting 1 row/1 col matrices into vectors
* Improve pp.check plotting function
* Add some warnings about functions and arguments that will be deprecated soon
# jagsUI 1.5.0
* Fix issues with NAs in parameters.
* Fix missing arguments in autojags().
* Handle errors in output processing so that samples are not lost completely.
* Make sure a specified random seed is used for initial value functions.
* Fix error where summary stats were printed in the wrong order for some parameters.
* Don't collapse 1 row/1col matrices into vectors automatically.
# jagsUI 1.4.9
* Fix bug with DIC output introduced in 1.4.7.
# jagsUI 1.4.8
* Minor changes to prep for CRAN submission.
* Fix more issues with random seeds and problems with DIC.
* Fix issue with setting seed affecting other random number generation.
* Allow turning deviance/DIC monitoring on/off when updating an existing model.
* Overhaul handling of adaptation; default to running a sequence of adapt() calls until JAGS reports adapation is adequate. Suggest minimum of 1000 adaptation iterations otherwise in man pages.
* Change output of summary function. Add ability to control factories.
# jagsUI 1.4.4
* Change default approach to generating random seeds.
* Add S3 method for View()
* Convert traceplot() to an S3 method from S4.
* Fix to allow running in parallel when dependencies are in non-standard libraries.
* Fix bug when updating jagsbasic class.
# jagsUI 1.4.2
* Changes to NAMESPACE to get clean build check on R-devel.
* Add ability to specify number of CPU cores to use when running in parallel.
* Fix a problem where saving output for a single scalar parameter broke output processing.
* Fix a problem where nonscalar estimated parameters with missing (i.e., non-estimated) values broke the display of summary stats.
* Explicitly import functions from default packages to meet new standards for building with R-devel.
* Change minimum required version of rjags to 3-13.
# jagsUI 1.3.7
* Add verbose argument to functions to allow suppression of all text output in the console as the function runs.
* Change method for closing connection to clusters when running in parallel to avoid closing unrelated connections.
* Adjust output for jags.basic.
* Fix problem with max.iter argument in autojags(). Clarify documentation and output for autojags().
* Add option save.all.iter in autojags() function to combine MCMC samples from all iterative updates into final posterior.
* Fix issue with calculating stats that sometimes occurred with a constant posterior distribution.
* Fix error where autojags did not handle NA rhat values properly.
* Added more helpful warning when at least one rhat value = NA.
# jagsUI 1.3.1
* Initial CRAN upload.
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