diff options
Diffstat (limited to 'inst/tinytest/test_process_output.R')
| -rw-r--r-- | inst/tinytest/test_process_output.R | 52 |
1 files changed, 30 insertions, 22 deletions
diff --git a/inst/tinytest/test_process_output.R b/inst/tinytest/test_process_output.R index edc4de5..e0a2729 100644 --- a/inst/tinytest/test_process_output.R +++ b/inst/tinytest/test_process_output.R @@ -1,3 +1,5 @@ +at_home <- identical( Sys.getenv("AT_HOME"), "TRUE" ) + process_output <- jagsUI:::process_output calc_stats <- jagsUI:::calc_stats fill_array <- jagsUI:::fill_array @@ -44,14 +46,14 @@ expect_true(is.null(out2$pD)) #Exclude parameters out3 <- process_output(samples, coda_only=c("alpha","kappa", "mu"), DIC=TRUE, quiet=TRUE) -expect_identical(names(out3$sims.list), names(out$sims.list)) -expect_identical(names(out3$mean), names(out$mean)) +expect_equal(names(out3$sims.list), names(out$sims.list)) +expect_equal(names(out3$mean), names(out$mean)) expect_false(any(is.na(unlist(out3$mean)))) -expect_identical(rownames(out3$summary), c("beta", "sigma", "deviance")) +expect_equal(rownames(out3$summary), c("beta", "sigma", "deviance")) # Check progress messages co <- capture.output(out <- process_output(samples, DIC=TRUE, quiet=FALSE)) -expect_identical(co, c("Calculating statistics....... ", "", "Done. ")) +expect_equal(co, c("Calculating statistics....... ", "", "Done. ")) # Unexpected error happens during process_output------------------------------- @@ -61,12 +63,14 @@ expect_message(out_fail <- process_output(samples, quiet=TRUE)) expect_true(is.null(out_fail)) # result is NULL #test that process_output matches old jagsUI process.output-------------------- -old_all <- readRDS("old_jagsUI_output.Rds") -new_po <- process_output(old_all$samples, DIC=TRUE, quiet=TRUE) -old_po <- readRDS("old_process_output.Rds") -expect_identical(new_po$summary, old_all$summary) -new_po$summary <- NULL -expect_identical(new_po, old_po) +if(at_home){ + old_all <- readRDS("old_jagsUI_output.Rds") + new_po <- process_output(old_all$samples, DIC=TRUE, quiet=TRUE) + old_po <- readRDS("old_process_output.Rds") + expect_equal(new_po$summary, old_all$summary) + new_po$summary <- NULL + expect_equal(new_po, old_po) +} # test that fill_array works properly------------------------------------------ dat <- 1:10 @@ -229,22 +233,26 @@ expect_true(length(out) == 11) # test that stats for all parameters are calculated by calc_stats-------------- -samples <- readRDS('coda_samples.Rds') -st <- calc_stats(samples) -expect_equal(dim(st), c(length(param_names(samples)), 11)) -expect_equal(rownames(st), param_names(samples)) -expect_equal(colnames(st), c('mean','sd','q2.5','q25','q50','q75','q97.5', +if(at_home){ + samples <- readRDS('coda_samples.Rds') + st <- calc_stats(samples) + expect_equal(dim(st), c(length(param_names(samples)), 11)) + expect_equal(rownames(st), param_names(samples)) + expect_equal(colnames(st), c('mean','sd','q2.5','q25','q50','q75','q97.5', 'overlap0','f','Rhat','n.eff')) -ref_output <- readRDS('calc_stats_output.Rds') -expect_equal(st, ref_output) + ref_output <- readRDS('calc_stats_output.Rds') + expect_equal(st, ref_output) +} # test that calculating stats for a subset of parameters works----------------- -samples <- readRDS('coda_samples.Rds') -ref_output <- readRDS('calc_stats_output.Rds') -ref_output[c(1,4:19),2:11] <- NA -st_sub <- calc_stats(samples, coda_only=c('alpha','mu')) -expect_identical(ref_output, st_sub) +if(at_home){ + samples <- readRDS('coda_samples.Rds') + ref_output <- readRDS('calc_stats_output.Rds') + ref_output[c(1,4:19),2:11] <- NA + st_sub <- calc_stats(samples, coda_only=c('alpha','mu')) + expect_equal(ref_output, st_sub) +} # test that calculation of pD/DIC works---------------------------------------- |