diff options
Diffstat (limited to 'inst/tinytest/test_jags.R')
| -rw-r--r-- | inst/tinytest/test_jags.R | 18 |
1 files changed, 9 insertions, 9 deletions
diff --git a/inst/tinytest/test_jags.R b/inst/tinytest/test_jags.R index be64ffb..6d57a6a 100644 --- a/inst/tinytest/test_jags.R +++ b/inst/tinytest/test_jags.R @@ -32,7 +32,7 @@ ref <- readRDS("longley_reference_fit.Rds") # Remove time/date based elements out$mcmc.info$elapsed.mins <- ref$mcmc.inf$elapsed.mins -expect_identical(out[-c(17,18,21)], ref[-c(17,18,21)]) +expect_equal(out[-c(17,18,21)], ref[-c(17,18,21)]) # Plots pdf(NULL) @@ -56,7 +56,7 @@ dev.off() expect_equal(pp, 0) # Other methods -expect_identical(out$summary, summary(out)) +expect_equal(out$summary, summary(out)) # Double check stats calculations expect_equal(out$mean$alpha, mean(as.matrix(out$samples[,"alpha"]))) @@ -75,7 +75,7 @@ out <- jags(data = data, inits = inits, parameters.to.save = params, ref <- readRDS("reference_codaOnly.Rds") out$mcmc.info$elapsed.mins <- ref$mcmc.inf$elapsed.mins -expect_identical(out[-c(17,18,21)], ref[-c(17,18,21)]) +expect_equal(out[-c(17,18,21)], ref[-c(17,18,21)]) # DIC = FALSE------------------------------------------------------------------ out <- jags(data = data, inits = inits, parameters.to.save = params, @@ -85,7 +85,7 @@ expect_false(out$calc.DIC) ref <- readRDS("reference_noDIC.Rds") out$mcmc.info$elapsed.mins <- ref$mcmc.inf$elapsed.mins -expect_identical(out[-c(15,16,19)], ref[-c(15,16,19)]) +expect_equal(out[-c(15,16,19)], ref[-c(15,16,19)]) # Reordered parameter names---------------------------------------------------- pars_new <- c("mu", "sigma", "alpha", "beta") @@ -95,7 +95,7 @@ out <- jags(data = data, inits = inits, parameters.to.save = pars_new, ref <- readRDS("reference_parsorder.Rds") out$mcmc.info$elapsed.mins <- ref$mcmc.inf$elapsed.mins -expect_identical(out[-c(17,18,21)], ref[-c(17,18,21)]) +expect_equal(out[-c(17,18,21)], ref[-c(17,18,21)]) # Reordered parameter names and no DIC----------------------------------------- pars_new <- c("mu", "sigma", "alpha", "beta") @@ -105,7 +105,7 @@ out <- jags(data = data, inits = inits, parameters.to.save = pars_new, ref <- readRDS("reference_parsorder_noDIC.Rds") out$mcmc.info$elapsed.mins <- ref$mcmc.inf$elapsed.mins -expect_identical(out[-c(15,16,19)], ref[-c(15,16,19)]) +expect_equal(out[-c(15,16,19)], ref[-c(15,16,19)]) # Run in parallel-------------------------------------------------------------- at_home <- identical( Sys.getenv("AT_HOME"), "TRUE" ) @@ -116,7 +116,7 @@ if(parallel::detectCores() > 1 & at_home){ model.file = modfile, n.chains = 3, n.adapt = 100, n.iter = 1000, n.burnin = 500, n.thin = 2, verbose=FALSE, parallel=TRUE) ref <- readRDS("longley_reference_fit.Rds") - expect_identical(out[-c(17,18,20:22)], ref[-c(17,18,20:22)]) + expect_equal(out[-c(17,18,20:22)], ref[-c(17,18,20:22)]) # With n.adapt = NULL out <- jags(data = data, inits = inits, parameters.to.save = params, @@ -171,8 +171,8 @@ out <- jags(data = data, inits = inits, parameters.to.save = c("alpha","beta"), model.file = modfile, n.chains = 3, n.adapt = 100, n.iter = 100, n.burnin = 50, n.thin = 1, verbose=FALSE, store.data=TRUE) -expect_identical(out$data, data) -expect_identical(out$inits, run_inits) +expect_equal(out$data, data) +expect_equal(out$inits, run_inits) # Check recovery after process_output errors----------------------------------- # Setting DIC to -999 forces process_output to error for testing |