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Diffstat (limited to 'inst/tinytest/test_jags.R')
| -rw-r--r-- | inst/tinytest/test_jags.R | 18 |
1 files changed, 18 insertions, 0 deletions
diff --git a/inst/tinytest/test_jags.R b/inst/tinytest/test_jags.R index e30147c..9937f1e 100644 --- a/inst/tinytest/test_jags.R +++ b/inst/tinytest/test_jags.R @@ -123,6 +123,24 @@ out <- jags(data = dataList, parameters.to.save = c("v", "lambda"), expect_equal(rownames(out$summary), c("v", "lambda","deviance")) +# No non-codaOnly parameters--------------------------------------------------- + +out <- jags(data = data, inits = inits, parameters.to.save = params, + model.file = modfile, n.chains = 3, n.adapt = 100, n.iter = 100, + n.burnin = 50, n.thin = 1, verbose=FALSE, DIC=FALSE, + codaOnly = params) +expect_equal(nrow(out$summary), 0) + +# Check recovery after process_output errors----------------------------------- +# Setting DIC to -999 forces process_output to error for testing +expect_message(out <- jags(data = data, inits = inits, + parameters.to.save = c("alpha","beta"), + model.file = modfile, n.chains = 3, n.adapt = 100, n.iter = 100, + n.burnin = 50, n.thin = 1, verbose=FALSE, DIC=-999)) +expect_inherits(out, "jagsUIbasic") +expect_equal(coda::varnames(out$samples), c("alpha","beta", "deviance")) +expect_equal(names(out), c("samples", "model")) + # Single chain and single iteration-------------------------------------------- out <- jags(data = data, inits = inits, parameters.to.save = params, model.file = modfile, n.chains = 1, n.adapt = 100, n.iter = 100, |