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Diffstat (limited to 'NEWS.md')
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@@ -0,0 +1,76 @@ +# jagsUI 1.6.0 + + * Extensive refactoring of internal code + * Don't drop output dimensions when only one parameter saved + * Summary method now returns the summary matrix + * Add tests + * Add vignette + +# jagsUI 1.5.2 + + * Remove View function due to problematic interactions with RStudio + * Improvements to traceplot and densityplot + * Make sure output is reproducible when parallel=FALSE + * Minor bugfixes + +# jagsUI 1.5.1 + + * Fix issue when chains adapted for different numbers of iterations + * Fix crash when DIC was requested but JAGS couldn't calculate it + * Stop auto-converting 1 row/1 col matrices into vectors + * Improve pp.check plotting function + * Add some warnings about functions and arguments that will be deprecated soon + +# jagsUI 1.5.0 + + * Fix issues with NAs in parameters. + * Fix missing arguments in autojags(). + * Handle errors in output processing so that samples are not lost completely. + * Make sure a specified random seed is used for initial value functions. + * Fix error where summary stats were printed in the wrong order for some parameters. + * Don't collapse 1 row/1col matrices into vectors automatically. + +# jagsUI 1.4.9 + + * Fix bug with DIC output introduced in 1.4.7. + +# jagsUI 1.4.8 + + * Minor changes to prep for CRAN submission. + * Fix more issues with random seeds and problems with DIC. + * Fix issue with setting seed affecting other random number generation. + * Allow turning deviance/DIC monitoring on/off when updating an existing model. + * Overhaul handling of adaptation; default to running a sequence of adapt() calls until JAGS reports adapation is adequate. Suggest minimum of 1000 adaptation iterations otherwise in man pages. + * Change output of summary function. Add ability to control factories. + +# jagsUI 1.4.4 + + * Change default approach to generating random seeds. + * Add S3 method for View() + * Convert traceplot() to an S3 method from S4. + * Fix to allow running in parallel when dependencies are in non-standard libraries. + * Fix bug when updating jagsbasic class. + +# jagsUI 1.4.2 + + * Changes to NAMESPACE to get clean build check on R-devel. + * Add ability to specify number of CPU cores to use when running in parallel. + * Fix a problem where saving output for a single scalar parameter broke output processing. + * Fix a problem where nonscalar estimated parameters with missing (i.e., non-estimated) values broke the display of summary stats. + * Explicitly import functions from default packages to meet new standards for building with R-devel. + * Change minimum required version of rjags to 3-13. + +# jagsUI 1.3.7 + + * Add verbose argument to functions to allow suppression of all text output in the console as the function runs. + * Change method for closing connection to clusters when running in parallel to avoid closing unrelated connections. + * Adjust output for jags.basic. + * Fix problem with max.iter argument in autojags(). Clarify documentation and output for autojags(). + * Add option save.all.iter in autojags() function to combine MCMC samples from all iterative updates into final posterior. + * Fix issue with calculating stats that sometimes occurred with a constant posterior distribution. + * Fix error where autojags did not handle NA rhat values properly. + * Added more helpful warning when at least one rhat value = NA. + +# jagsUI 1.3.1 + + * Initial CRAN upload. |