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authorKen Kellner <ken@kenkellner.com>2021-06-16 13:08:14 -0400
committerKen Kellner <ken@kenkellner.com>2021-06-16 13:09:57 -0400
commit154d2af4d36dc5eb14557afb5d35a2fb08e71fc2 (patch)
tree081eb55b070a195f0564d5ce0c185ae034e49197
parent163254176b38680c8d604c6f338dec33569e3a40 (diff)
Switch from Travis to Github actions
-rw-r--r--.Rbuildignore1
-rw-r--r--.github/.gitignore1
-rw-r--r--.github/workflows/R-CMD-check.yaml85
-rw-r--r--.travis.yml12
-rw-r--r--README.md3
5 files changed, 89 insertions, 13 deletions
diff --git a/.Rbuildignore b/.Rbuildignore
index 540c36a..e9ca541 100644
--- a/.Rbuildignore
+++ b/.Rbuildignore
@@ -11,3 +11,4 @@ example2.R
README.md
env.R
.travis.yml
+^\.github$
diff --git a/.github/.gitignore b/.github/.gitignore
new file mode 100644
index 0000000..2d19fc7
--- /dev/null
+++ b/.github/.gitignore
@@ -0,0 +1 @@
+*.html
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
new file mode 100644
index 0000000..90f242b
--- /dev/null
+++ b/.github/workflows/R-CMD-check.yaml
@@ -0,0 +1,85 @@
+# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
+# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
+on:
+ push:
+ branches:
+ - main
+ - master
+ pull_request:
+ branches:
+ - main
+ - master
+
+name: R-CMD-check
+
+jobs:
+ R-CMD-check:
+ runs-on: ${{ matrix.config.os }}
+
+ name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+ strategy:
+ fail-fast: false
+ matrix:
+ config:
+ - {os: windows-latest, r: 'release'}
+ - {os: macOS-latest, r: 'release'}
+ - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+ - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+ - {os: ubuntu-20.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+
+ env:
+ R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+ RSPM: ${{ matrix.config.rspm }}
+ GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+ steps:
+ - uses: actions/checkout@v2
+
+ - uses: r-lib/actions/setup-r@v1
+ with:
+ r-version: ${{ matrix.config.r }}
+
+ - uses: r-lib/actions/setup-pandoc@v1
+
+ - name: Query dependencies
+ run: |
+ install.packages('remotes')
+ saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+ writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+ shell: Rscript {0}
+
+ - name: Cache R packages
+ if: runner.os != 'Windows'
+ uses: actions/cache@v2
+ with:
+ path: ${{ env.R_LIBS_USER }}
+ key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+ restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+
+ - name: Install system dependencies
+ if: runner.os == 'Linux'
+ run: |
+ while read -r cmd
+ do
+ eval sudo $cmd
+ done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
+
+ - name: Install dependencies
+ run: |
+ remotes::install_deps(dependencies = TRUE)
+ remotes::install_cran("rcmdcheck")
+ shell: Rscript {0}
+
+ - name: Check
+ env:
+ _R_CHECK_CRAN_INCOMING_REMOTE_: false
+ run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--ignore-vignettes", "--no-build-vignettes", "--as-cran"), build_args = c("--no-manual", "--no-build-vignettes"), error_on = "warning", check_dir = "check")
+ shell: Rscript {0}
+
+ - name: Upload check results
+ if: failure()
+ uses: actions/upload-artifact@main
+ with:
+ name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+ path: check
diff --git a/.travis.yml b/.travis.yml
deleted file mode 100644
index 5dec191..0000000
--- a/.travis.yml
+++ /dev/null
@@ -1,12 +0,0 @@
-language: r
-r:
- - release
- - devel
-
-cache: packages
-sudo: false
-
-addons:
- apt:
- packages:
- - jags
diff --git a/README.md b/README.md
index 28f93ac..b13bfdd 100644
--- a/README.md
+++ b/README.md
@@ -1,8 +1,9 @@
jagsUI
==========
+
[![CRAN status](https://www.r-pkg.org/badges/version/jagsUI)](https://cran.r-project.org/web/packages/jagsUI/index.html)
-[![Build Status](https://travis-ci.org/kenkellner/jagsUI.svg?branch=master)](https://travis-ci.org/kenkellner/jagsUI)
+[![R build status](https://github.com/kenkellner/jagsUI/workflows/R-CMD-check/badge.svg)](https://github.com/kenkellner/jagsUI/actions)
This package runs `JAGS` (Just Another Gibbs Sampler) analyses from within `R`. It acts as a wrapper and alternative interface for the functions in the `rjags` package and adds some custom output and graphical options. It also makes running chains in parallel quick and easy.