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+@article{Bates_2015,
+ author = {Bates, Douglas and Mächler, Martin and Bolker, Ben and Walker, Steve},
+ title = {Fitting Linear Mixed-Effects Models Using lme4},
+ journal = {Journal of Statistical Software},
+ year = {2015},
+ number = {1},
+ volume = {67},
+ doi = {10.18637/jss.v067.i01}
+}
+
+@article{Carpenter_2017,
+ author = {Carpenter, Bob and Gelman, Andrew and Hoffman, Matthew D. and Lee, Daniel and Goodrich, Ben and Betancourt, Michael and Brubaker, Marcus and Guo, Jiqiang and Li, Peter and Riddell, Allen},
+ title = {Stan: A Probabilistic Programming Language},
+ journal = {Journal of Statistical Software},
+ publisher = {Foundation for Open Access Statistic},
+ year = {2017},
+ number = {1},
+ volume = {76},
+ url = {http://dx.doi.org/10.18637/jss.v076.i01},
+ doi = {10.18637/jss.v076.i01}
+}
+
+@article{Chandler2011,
+ author = {Chandler, Richard B. and Royle, J. Andrew and King, David I.},
+ title = {Inference about density and temporary emigration in unmarked populations},
+ journal = {Ecology},
+ year = {2011},
+ number = {7},
+ volume = {92},
+ pages = {1429--1435},
+ url = {http://dx.doi.org/10.1890/10-2433.1},
+ doi = {10.1890/10-2433.1},
+ file = {:Chandler2011b.pdf:PDF},
+ keyword = {Chestnut-sided Warbler, Dendroica pensylvanica, N-mixture model, USA, White Mountain National Forest, detection probability, hierarchical, models, population density, spot-mapping, temporary emigration, unmarked populations}
+}
+
+@article{Fiske_2011,
+ author = {Fiske, Ian and Chandler, Richard and others, },
+ title = {Unmarked: an {R} package for fitting hierarchical models of wildlife occurrence and abundance},
+ journal = {Journal of Statistical Software},
+ year = {2011},
+ number = {10},
+ volume = {43},
+ pages = {1--23},
+ doi = {10.18637/jss.v043.i10}
+}
+
+@book{Gelman2007,
+ author = {Gelman, Andrew and Hill, Jennifer},
+ title = {Data analysis using regression and multilevel/hierarchical models},
+ publisher = {Cambridge University Press},
+ year = {2007},
+ pages = {651},
+ url = {http://dx.doi.org/10.2277/0521867061, http://dx.doi.org/10.2277/0521867061},
+ doi = {10.2277/0521867061},
+ address = {New York, NY},
+ file = {:Gelman2007.pdf:PDF},
+ isbn = {0521867061},
+ pmid = {14341096}
+}
+
+@article{Hoffman_2014,
+ author = {Hoffman, Matthew D and Gelman, Andrew},
+ title = {The {N}o-{U}-{T}urn sampler: adaptively setting path lengths in {H}amiltonian {M}onte {C}arlo.},
+ journal = {Journal of Machine Learning Research},
+ year = {2014},
+ number = {1},
+ volume = {15},
+ pages = {1593--1623}
+}
+
+@article{MacKenzie_2002,
+ author = {MacKenzie, Darryl I. and Nichols, James D. and Lachman, Gideon B. and Droege, Sam and Royle, J. Andrew and Langtimm, Catherine A.},
+ title = {Estimating site occupancy rates when detection probabilities are less than one},
+ journal = {Ecology},
+ publisher = {Wiley},
+ year = {2002},
+ month = {aug},
+ number = {8},
+ volume = {83},
+ pages = {2248--2255},
+ url = {http://dx.doi.org/10.1890/0012-9658(2002)083[2248:esorwd]2.0.co;2},
+ doi = {10.1890/0012-9658(2002)083[2248:esorwd]2.0.co;2}
+}
+
+@article{MacKenzie_2004a,
+ author = {MacKenzie, Darryl I. and Bailey, Larissa L.},
+ title = {Assessing the fit of site-occupancy models},
+ journal = {Journal of Agricultural, Biological, and Environmental Statistics},
+ year = {2004},
+ number = {3},
+ volume = {9},
+ pages = {300--318},
+ doi = {10.1198/108571104x3361}
+}
+
+@article{Schmid_2004,
+ author = {Schmid, Hans and Zbinden, Niklaus and Keller, Verena},
+ title = {Überwachung der bestandsentwicklung häufiger brutvögel in der schweiz},
+ journal = {Swiss Ornithological Institute Sempach Switzerland},
+ year = {2004}
+}
+
+@article{Vehtari_2017,
+ author = {Vehtari, Aki and Gelman, Andrew and Gabry, Jonah},
+ title = {Practical {B}ayesian model evaluation using leave-one-out cross-validation and {WAIC}},
+ journal = {Statistics and Computing},
+ year = {2017},
+ number = {5},
+ volume = {27},
+ pages = {1413--1432},
+ doi = {10.1007/s11222-016-9696-4}
+}
+
+@article{Wright_2019,
+ author = {Wright, Wilson J. and Irvine, Kathryn M. and Higgs, Megan D.},
+ title = {Identifying occupancy model inadequacies: can residuals separately assess detection and presence?},
+ journal = {Ecology},
+ year = {2019},
+ pages = {e02703},
+ doi = {10.1002/ecy.2703}
+}
+
+@article{Yackulic_2020,
+ author = {Yackulic, Charles B. and Dodrill, Michael and Dzul, Maria and Sanderlin, Jamie S. and Reid, Janice A.},
+ title = {A need for speed in {B}ayesian population models: a practical guide to marginalizing and recovering discrete latent states},
+ journal = {Ecological Applications},
+ year = {2020},
+ number = {5},
+ volume = {30},
+ doi = {10.1002/eap.2112}
+}
+
+@article{Broms_2014,
+author = {Broms, Kristin M. and Johnson, Devin S. and Altwegg, Res and Conquest, Loveday L.},
+title = {Spatial occupancy models applied to atlas data show Southern Ground Hornbills strongly depend on protected areas},
+journal = {Ecological Applications},
+volume = {24},
+number = {2},
+pages = {363-374},
+doi = {https://doi.org/10.1890/12-2151.1},
+url = {https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1890/12-2151.1},
+year = {2014}
+}
+
+
+@article{Clark_2019,
+author = {Clark, Allan E. and Altwegg, Res},
+title = {Efficient Bayesian analysis of occupancy models with logit link functions},
+journal = {Ecology and Evolution},
+volume = {9},
+number = {2},
+pages = {756-768},
+doi = {https://doi.org/10.1002/ece3.4850},
+url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/ece3.4850},
+year = {2019}
+}
+
+
+@article{Hodges_2010,
+  title={Adding spatially-correlated errors can mess up the fixed effect you love},
+  author={Hodges, James S and Reich, Brian J},
+  journal={The American Statistician},
+  volume={64},
+  number={4},
+  pages={325--334},
+  year={2010},
+  publisher={Taylor \& Francis}
+}
+
+@article{Johnson_2013,
+author = {Johnson, Devin S. and Conn, Paul B. and Hooten, Mevin B. and Ray, Justina C. and Pond, Bruce A.},
+title = {Spatial occupancy models for large data sets},
+journal = {Ecology},
+volume = {94},
+number = {4},
+pages = {801-808},
+doi = {https://doi.org/10.1890/12-0564.1},
+url = {https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1890/12-0564.1},
+year = {2013}
+}
+
+@book{Banerjee_2014,
+  title={Hierarchical modeling and analysis for spatial data},
+  author={Banerjee, Sudipto and Carlin, Bradley P and Gelfand, Alan E},
+  year={2014},
+  publisher={CRC press}
+}