diff options
| author | Ken Kellner <ken@kenkellner.com> | 2022-02-24 10:18:07 -0500 |
|---|---|---|
| committer | Ken Kellner <ken@kenkellner.com> | 2022-02-24 10:18:07 -0500 |
| commit | e02b134359cf4953bd0e642f0d7e598393691431 (patch) | |
| tree | 4d74ca617ad065750d1a4854df7476fd40c67fe2 | |
| parent | 89e287a6736068c7d4f4d7a0bb5525486bc523a9 (diff) | |
Fix a few more failing tests
| -rw-r--r-- | LICENSE.md | 2 | ||||
| -rw-r--r-- | Project.toml | 6 | ||||
| -rw-r--r-- | examples/occupancy.ipynb | 14549 | ||||
| -rw-r--r-- | src/design.jl | 3 | ||||
| -rw-r--r-- | src/fit.jl | 16 | ||||
| -rw-r--r-- | test/runtests.jl | 2 | ||||
| -rw-r--r-- | test/test_categorical.jl | 10 | ||||
| -rw-r--r-- | test/test_nmix.jl | 24 | ||||
| -rw-r--r-- | test/test_occu.jl | 32 |
9 files changed, 14259 insertions, 385 deletions
@@ -1,6 +1,6 @@ Unmarked.jl is licensed under the MIT License: -> Copyright (c) 2019: Ken Kellner +> Copyright (c) 2019-2022: Ken Kellner > > Permission is hereby granted, free of charge, to any person obtaining > a copy of this software and associated documentation files (the diff --git a/Project.toml b/Project.toml index 188d868..2afac76 100644 --- a/Project.toml +++ b/Project.toml @@ -1,7 +1,9 @@ name = "Unmarked" uuid = "d24412d6-d11b-11e9-3460-93a4449a3529" -authors = ["Ken Kellner <ken@kenkellner.com>"] -version = "0.1.0" +license = "MIT" +desc = "Ecological models of occupancy and abundance" +authors = ["Ken Kellner <contact@kenkellner.com>"] +version = "0.1.1" [deps] CategoricalArrays = "324d7699-5711-5eae-9e2f-1d82baa6b597" diff --git a/examples/occupancy.ipynb b/examples/occupancy.ipynb index 4ccdb68..3c02e1e 100644 --- a/examples/occupancy.ipynb +++ b/examples/occupancy.ipynb @@ -14,297 +14,19 @@ { "cell_type": "code", "execution_count": 1, - "metadata": { - "scrolled": true - }, + "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "┌ Info: Precompiling Unmarked [d24412d6-d11b-11e9-3460-93a4449a3529]\n", - "└ @ Base loading.jl:1423\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:inv2π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:fourπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:sqrtπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:twoπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:invπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:invsqrt2}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:log2π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:twoinvπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:logtwo}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants at irrationals.jl:175.\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:sqrt3}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:logπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:halfπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:inv4π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:sqrt2}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:sqrt2π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:sqrthalfπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:loghalf}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:quartπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:invsqrt2π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:fourinvπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:sqrt4π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition Type##kw(Any, Type{Base.MPFR.BigFloat}, Base.Irrational{:log4π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:inv2π}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:sqrtπ}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:twoπ}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:invsqrt2}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:sqrt2π}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:sqrthalfπ}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:fourπ}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:invπ}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:log2π}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:twoinvπ}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:logtwo}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:sqrt3}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:logπ}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:halfπ}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:inv4π}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:sqrt2}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:loghalf}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:log4π}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:quartπ}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:invsqrt2π}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:fourinvπ}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float64})(Base.Irrational{:sqrt4π}) in module StatsFuns at irrationals.jl:191 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:inv2π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:fourπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:sqrtπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:twoπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:invπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:invsqrt2}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:log2π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:twoinvπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:logtwo}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants at irrationals.jl:175.\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:sqrt3}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:logπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:halfπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:inv4π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:sqrt2}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:sqrt2π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:sqrthalfπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:loghalf}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:quartπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:invsqrt2π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:fourinvπ}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:sqrt4π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Base.MPFR.BigFloat})(Base.Irrational{:log4π}) in module StatsFuns at irrationals.jl:182 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:inv2π}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:sqrtπ}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:twoπ}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:invsqrt2}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:sqrt2π}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:sqrthalfπ}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:fourπ}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:invπ}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:log2π}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:twoinvπ}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:logtwo}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:sqrt3}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:logπ}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:halfπ}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:inv4π}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:sqrt2}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:loghalf}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:log4π}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:quartπ}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:invsqrt2π}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:sqrt4π}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n", - "WARNING: Method definition (::Type{Float32})(Base.Irrational{:fourinvπ}) in module StatsFuns at irrationals.jl:192 overwritten in module IrrationalConstants on the same line (check for duplicate calls to `include`).\n", - " ** incremental compilation may be fatally broken for this module **\n", - "\n" + "└ @ Base loading.jl:1423\n" ] } ], "source": [ - "using Unmarked, DataFrames" + "using Unmarked, DataFrames;" ] }, { @@ -318,28 +40,7 @@ "cell_type": "code", "execution_count": 2, "metadata": {}, - "outputs": [ - { - "ename": "LoadError", - "evalue": "MethodError: no method matching DataFrame(::Matrix{Float64}, ::Symbol)\n\u001b[0mClosest candidates are:\n\u001b[0m DataFrame(::AbstractMatrix) at ~/.julia/packages/DataFrames/yH0f6/src/dataframe/dataframe.jl:209\n\u001b[0m DataFrame(::AbstractMatrix, \u001b[91m::AbstractVector{Symbol}\u001b[39m; makeunique) at ~/.julia/packages/DataFrames/yH0f6/src/dataframe/dataframe.jl:209\n\u001b[0m DataFrame(::T; copycols) where T at ~/.julia/packages/DataFrames/yH0f6/src/other/tables.jl:22", - "output_type": "error", - "traceback": [ - "MethodError: no method matching DataFrame(::Matrix{Float64}, ::Symbol)\n\u001b[0mClosest candidates are:\n\u001b[0m DataFrame(::AbstractMatrix) at ~/.julia/packages/DataFrames/yH0f6/src/dataframe/dataframe.jl:209\n\u001b[0m DataFrame(::AbstractMatrix, \u001b[91m::AbstractVector{Symbol}\u001b[39m; makeunique) at ~/.julia/packages/DataFrames/yH0f6/src/dataframe/dataframe.jl:209\n\u001b[0m DataFrame(::T; copycols) where T at ~/.julia/packages/DataFrames/yH0f6/src/other/tables.jl:22", - "", - "Stacktrace:", - " [1] gen_covs(f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.Term, StatsModels.Term}}, n::Int64)", - " @ Unmarked ~/code/archive/Unmarked.jl/src/utils.jl:14", - " [2] simulate(#unused#::Type{Occu}, ψ_form::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.Term, StatsModels.Term}}, p_form::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.Term, StatsModels.Term}}, ydims::Tuple{Int64, Int64}, coef::Vector{Float64})", - " @ Unmarked ~/code/archive/Unmarked.jl/src/occupancy.jl:95", - " [3] top-level scope", - " @ In[2]:4", - " [4] eval", - " @ ./boot.jl:373 [inlined]", - " [5] include_string(mapexpr::typeof(REPL.softscope), mod::Module, code::String, filename::String)", - " @ Base ./loading.jl:1196" - ] - } - ], + "outputs": [], "source": [ "ψ_formula = @formula(ψ~elev+forest);\n", "p_formula = @formula(p~precip+wind);\n", @@ -356,7 +57,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 3, "metadata": {}, "outputs": [], "source": [ @@ -367,21 +68,51 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "### Examine Results" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ + "### Examine Results\n", + "\n", "Summary of fitted coefficient values, standard errors, and confidence intervals:" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 4, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [] + }, + "execution_count": 4, + "metadata": {}, + "output_type": "execute_result" + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\n", + "Occupancy: ψ ~ elev + forest\n", + "────────────────────────────────────────────────────────────────\n", + " Estimate SE z Pr(>|z|) Low 95% Up 95%\n", + "────────────────────────────────────────────────────────────────\n", + "(Intercept) -0.0555 0.078 0.71 0.4768 -0.2083 0.0973\n", + "elev -0.3729 0.0792 4.71 <1e-99 -0.5281 -0.2177\n", + "forest 1.3448 0.1114 12.07 <1e-99 1.1265 1.563\n", + "────────────────────────────────────────────────────────────────\n", + "\n", + "Detection: p ~ precip + wind\n", + "────────────────────────────────────────────────────────────────\n", + " Estimate SE z Pr(>|z|) Low 95% Up 95%\n", + "────────────────────────────────────────────────────────────────\n", + "(Intercept) -0.1841 0.0477 3.86 0.0001 -0.2776 -0.0906\n", + "precip -0.0291 0.0437 0.67 0.5045 -0.1147 0.0564\n", + "wind 0.7863 0.0483 16.29 <1e-99 0.6917 0.8809\n", + "────────────────────────────────────────────────────────────────\n", + "\n", + "AIC: 4071.2476" + ] + } + ], "source": [ "fit" ] @@ -395,9 +126,46 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 5, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "<div class=\"data-frame\"><p>6 rows × 3 columns</p><table class=\"data-frame\"><thead><tr><th></th><th>coef</th><th>model</th><th>truth</th></tr><tr><th></th><th title=\"String\">String</th><th title=\"Float64\">Float64</th><th title=\"Float64\">Float64</th></tr></thead><tbody><tr><th>1</th><td>(Intercept)</td><td>-0.1</td><td>0.0</td></tr><tr><th>2</th><td>elev</td><td>-0.4</td><td>-0.5</td></tr><tr><th>3</th><td>forest</td><td>1.3</td><td>1.2</td></tr><tr><th>4</th><td>(Intercept)</td><td>-0.2</td><td>-0.2</td></tr><tr><th>5</th><td>precip</td><td>-0.0</td><td>0.0</td></tr><tr><th>6</th><td>wind</td><td>0.8</td><td>0.7</td></tr></tbody></table></div>" + ], + "text/latex": [ + "\\begin{tabular}{r|ccc}\n", + "\t& coef & model & truth\\\\\n", + "\t\\hline\n", + "\t& String & 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.drag(Gadfly.guide_background_drag_onmove,\n", + " Gadfly.guide_background_drag_onstart,\n", + " Gadfly.guide_background_drag_onend);\n", + " this.mouseenter(function (event) {\n", + " init_pan_zoom(this.plotroot());\n", + " });\n", + " return this;\n", + " };\n", + "});\n", + "\n", + "\n", + "Gadfly.plot_mousemove = function(event, _x_px, _y_px) {\n", + " var root = this.plotroot();\n", + " var viewbounds = root.viewportplotbounds();\n", + "\n", + " // (_x_px, _y_px) are offsets relative to page (event.layerX, event.layerY) rather than viewport\n", + " var x_px = event.clientX - viewbounds.x0;\n", + " var y_px = event.clientY - viewbounds.y0;\n", + " if (root.data(\"crosshair\")) {\n", + " px_per_mm = root.data(\"px_per_mm\");\n", + " bB = root.select('boundingbox').node.getAttribute('value').split(' ');\n", + " uB = root.select('unitbox').node.getAttribute('value').split(' ');\n", + " xscale = root.data(\"xscale\");\n", + " yscale = root.data(\"yscale\");\n", + " xtranslate = root.data(\"tx\");\n", + " ytranslate = root.data(\"ty\");\n", + "\n", + " xoff_mm = bB[0].substr(0,bB[0].length-2)/1;\n", + " yoff_mm = bB[1].substr(0,bB[1].length-2)/1;\n", + " xoff_unit = uB[0]/1;\n", + " yoff_unit = uB[1]/1;\n", + " mm_per_xunit = bB[2].substr(0,bB[2].length-2) / uB[2];\n", + " mm_per_yunit = bB[3].substr(0,bB[3].length-2) / uB[3];\n", + " \n", + " x_unit = ((x_px / px_per_mm - xtranslate) / xscale - xoff_mm) / mm_per_xunit + xoff_unit;\n", + " y_unit = ((y_px / px_per_mm - ytranslate) / yscale - yoff_mm) / mm_per_yunit + yoff_unit;\n", + "\n", + " root.select('.crosshair').select('.primitive').select('text')\n", + " .node.innerHTML = x_unit.toPrecision(3)+\",\"+y_unit.toPrecision(3);\n", + " };\n", + "};\n", + "\n", + "Gadfly.helpscreen_visible = function(event) {\n", + " helpscreen_visible(this.plotroot());\n", + "};\n", + "var helpscreen_visible = function(root) {\n", + " root.select(\".helpscreen\").animate({\"fill-opacity\": 1.0}, 250);\n", + "};\n", + "\n", + "Gadfly.helpscreen_hidden = function(event) {\n", + " helpscreen_hidden(this.plotroot());\n", + "};\n", + "var helpscreen_hidden = function(root) {\n", + " root.select(\".helpscreen\").animate({\"fill-opacity\": 0.0}, 250);\n", + "};\n", + "\n", + "// When the plot is moused over, emphasize the grid lines.\n", + "Gadfly.plot_mouseover = function(event) {\n", + " var root = this.plotroot();\n", + "\n", + " var keyboard_help = function(event) {\n", + " if (event.which == 191) { // ?\n", + " helpscreen_visible(root);\n", + " }\n", + " };\n", + " root.data(\"keyboard_help\", keyboard_help);\n", + " window.addEventListener(\"keydown\", keyboard_help);\n", + "\n", + " var keyboard_pan_zoom = function(event) {\n", + " var bounds = root.plotbounds(),\n", + " width = bounds.x1 - bounds.x0;\n", + " height = bounds.y1 - bounds.y0;\n", + " if (event.which == 187 || event.which == 73) { // plus or i\n", + " increase_zoom_by_position(root, 0.1, true);\n", + " } else if (event.which == 189 || event.which == 79) { // minus or o\n", + " increase_zoom_by_position(root, -0.1, true);\n", + " } else if (event.which == 39 || event.which == 76) { // right-arrow or l\n", + " set_plot_pan_zoom(root, root.data(\"tx\")-width/10, root.data(\"ty\"),\n", + " root.data(\"xscale\"), root.data(\"yscale\"));\n", + " } else if (event.which == 40 || event.which == 74) { // down-arrow or j\n", + " set_plot_pan_zoom(root, root.data(\"tx\"), root.data(\"ty\")-height/10,\n", + " root.data(\"xscale\"), root.data(\"yscale\"));\n", + " } else if (event.which == 37 || event.which == 72) { // left-arrow or h\n", + " set_plot_pan_zoom(root, root.data(\"tx\")+width/10, root.data(\"ty\"),\n", + " root.data(\"xscale\"), root.data(\"yscale\"));\n", + " } else if (event.which == 38 || event.which == 75) { // up-arrow or k\n", + " set_plot_pan_zoom(root, root.data(\"tx\"), root.data(\"ty\")+height/10,\n", + " root.data(\"xscale\"), root.data(\"yscale\"));\n", + " } else if (event.which == 82) { // r\n", + " set_plot_pan_zoom(root, 0.0, 0.0, 1.0, 1.0);\n", + " } else if (event.which == 191) { // ?\n", + " helpscreen_hidden(root);\n", + " } else if (event.which == 67) { // c\n", + " root.data(\"crosshair\",!root.data(\"crosshair\"));\n", + " root.select(\".crosshair\")\n", + " .animate({\"fill-opacity\": root.data(\"crosshair\") ? 1.0 : 0.0}, 250);\n", + " }\n", + " };\n", + " root.data(\"keyboard_pan_zoom\", keyboard_pan_zoom);\n", + " window.addEventListener(\"keyup\", keyboard_pan_zoom);\n", + "\n", + " var xgridlines = root.select(\".xgridlines\"),\n", + " ygridlines = root.select(\".ygridlines\");\n", + "\n", + " if (xgridlines) {\n", + " xgridlines.data(\"unfocused_strokedash\",\n", + " xgridlines.attribute(\"stroke-dasharray\").replace(/(\\d)(,|$)/g, \"$1mm$2\"));\n", + " var destcolor = root.data(\"focused_xgrid_color\");\n", + " xgridlines.attribute(\"stroke-dasharray\", \"none\")\n", + " .selectAll(\"path\")\n", + " .animate({stroke: destcolor}, 250);\n", + " }\n", + "\n", + " if (ygridlines) {\n", + " ygridlines.data(\"unfocused_strokedash\",\n", + " ygridlines.attribute(\"stroke-dasharray\").replace(/(\\d)(,|$)/g, \"$1mm$2\"));\n", + " var destcolor = root.data(\"focused_ygrid_color\");\n", + " ygridlines.attribute(\"stroke-dasharray\", \"none\")\n", + " .selectAll(\"path\")\n", + " .animate({stroke: destcolor}, 250);\n", + " }\n", + "\n", + " root.select(\".crosshair\")\n", + " .animate({\"fill-opacity\": root.data(\"crosshair\") ? 1.0 : 0.0}, 250);\n", + " root.select(\".questionmark\").animate({\"fill-opacity\": 1.0}, 250);\n", + "};\n", + "\n", + "// Reset pan and zoom on double click\n", + "Gadfly.plot_dblclick = function(event) {\n", + " set_plot_pan_zoom(this.plotroot(), 0.0, 0.0, 1.0, 1.0);\n", + "};\n", + "\n", + "// Unemphasize grid lines on mouse out.\n", + "Gadfly.plot_mouseout = function(event) {\n", + " var root = this.plotroot();\n", + "\n", + " window.removeEventListener(\"keyup\", root.data(\"keyboard_pan_zoom\"));\n", + " root.data(\"keyboard_pan_zoom\", undefined);\n", + " window.removeEventListener(\"keydown\", root.data(\"keyboard_help\"));\n", + " root.data(\"keyboard_help\", undefined);\n", + "\n", + " var xgridlines = root.select(\".xgridlines\"),\n", + " ygridlines = root.select(\".ygridlines\");\n", + "\n", + " if (xgridlines) {\n", + " var destcolor = root.data(\"unfocused_xgrid_color\");\n", + " xgridlines.attribute(\"stroke-dasharray\", xgridlines.data(\"unfocused_strokedash\"))\n", + " .selectAll(\"path\")\n", + " .animate({stroke: destcolor}, 250);\n", + " }\n", + "\n", + " if (ygridlines) {\n", + " var destcolor = root.data(\"unfocused_ygrid_color\");\n", + " ygridlines.attribute(\"stroke-dasharray\", ygridlines.data(\"unfocused_strokedash\"))\n", + " .selectAll(\"path\")\n", + " .animate({stroke: destcolor}, 250);\n", + " }\n", + "\n", + " root.select(\".crosshair\").animate({\"fill-opacity\": 0.0}, 250);\n", + " root.select(\".questionmark\").animate({\"fill-opacity\": 0.0}, 250);\n", + " helpscreen_hidden(root);\n", + "};\n", + "\n", + "\n", + "var set_geometry_transform = function(root, tx, ty, xscale, yscale) {\n", + " var xscalable = root.hasClass(\"xscalable\"),\n", + " yscalable = root.hasClass(\"yscalable\");\n", + "\n", + " var old_xscale = root.data(\"xscale\"),\n", + " old_yscale = root.data(\"yscale\");\n", + "\n", + " var xscale = xscalable ? xscale : 1.0,\n", + " yscale = yscalable ? yscale : 1.0;\n", + "\n", + " tx = xscalable ? tx : 0.0;\n", + " ty = yscalable ? ty : 0.0;\n", + "\n", + " var t = new Snap.Matrix().translate(tx, ty).scale(xscale, yscale);\n", + " root.selectAll(\".geometry, image\").forEach(function (element, i) {\n", + " element.transform(t);\n", + " });\n", + "\n", + " var t = new Snap.Matrix().scale(1.0/xscale, 1.0/yscale);\n", + " root.selectAll('.marker').forEach(function (element, i) {\n", + " element.selectAll('.primitive').forEach(function (element, i) {\n", + " element.transform(t);\n", + " }) });\n", + "\n", + " bounds = root.plotbounds();\n", + " px_per_mm = root.data(\"px_per_mm\");\n", + "\n", + " if (yscalable) {\n", + " var xfixed_t = new Snap.Matrix().translate(0, ty).scale(1.0, yscale);\n", + " root.selectAll(\".xfixed\")\n", + " .forEach(function (element, i) {\n", + " element.transform(xfixed_t);\n", + " });\n", + "\n", + " ylabels = root.select(\".ylabels\");\n", + " if (ylabels) {\n", + " ylabels.transform(xfixed_t)\n", + " .selectAll(\"g\")\n", + " .forEach(function (element, i) {\n", + " if (element.attribute(\"gadfly:inscale\") == \"true\") {\n", + " unscale_t = new Snap.Matrix();\n", + " unscale_t.scale(1, 1/yscale);\n", + " element.select(\"text\").transform(unscale_t);\n", + " \n", + " var y = element.attr(\"transform\").globalMatrix.f / px_per_mm;\n", + " element.attr(\"visibility\",\n", + " bounds.y0 <= y && y <= bounds.y1 ? \"visible\" : \"hidden\");\n", + " }\n", + " });\n", + " }\n", + " }\n", + "\n", + " if (xscalable) {\n", + " var yfixed_t = new Snap.Matrix().translate(tx, 0).scale(xscale, 1.0);\n", + " var xtrans = new Snap.Matrix().translate(tx, 0);\n", + " root.selectAll(\".yfixed\")\n", + " .forEach(function (element, i) {\n", + " element.transform(yfixed_t);\n", + " });\n", + "\n", + " xlabels = root.select(\".xlabels\");\n", + " if (xlabels) {\n", + " xlabels.transform(yfixed_t)\n", + " .selectAll(\"g\")\n", + " .forEach(function (element, i) {\n", + " if (element.attribute(\"gadfly:inscale\") == \"true\") {\n", + " unscale_t = new Snap.Matrix();\n", + " unscale_t.scale(1/xscale, 1);\n", + " element.select(\"text\").transform(unscale_t);\n", + "\n", + " var x = element.attr(\"transform\").globalMatrix.e / px_per_mm;\n", + " element.attr(\"visibility\",\n", + " bounds.x0 <= x && x <= bounds.x1 ? \"visible\" : \"hidden\");\n", + " }\n", + " });\n", + " }\n", + " }\n", + "};\n", + "\n", + "\n", + "// Find the most appropriate tick scale and update label visibility.\n", + "var update_tickscale = function(root, scale, axis) {\n", + " if (!root.hasClass(axis + \"scalable\")) return;\n", + "\n", + " var tickscales = root.data(axis + \"tickscales\");\n", + " var best_tickscale = 1.0;\n", + " var best_tickscale_dist = Infinity;\n", + " for (tickscale in tickscales) {\n", + " var dist = Math.abs(Math.log(tickscale) - Math.log(scale));\n", + " if (dist < best_tickscale_dist) {\n", + " best_tickscale_dist = dist;\n", + " best_tickscale = tickscale;\n", + " }\n", + " }\n", + "\n", + " if (best_tickscale != root.data(axis + \"tickscale\")) {\n", + " root.data(axis + \"tickscale\", best_tickscale);\n", + " var mark_inscale_gridlines = function (element, i) {\n", + " if (element.attribute(\"gadfly:inscale\") == null) { return; }\n", + " var inscale = element.attr(\"gadfly:scale\") == best_tickscale;\n", + " element.attribute(\"gadfly:inscale\", inscale);\n", + " element.attr(\"visibility\", inscale ? \"visible\" : \"hidden\");\n", + " };\n", + "\n", + " var mark_inscale_labels = function (element, i) {\n", + " if (element.attribute(\"gadfly:inscale\") == null) { return; }\n", + " var inscale = element.attr(\"gadfly:scale\") == best_tickscale;\n", + " element.attribute(\"gadfly:inscale\", inscale);\n", + " element.attr(\"visibility\", inscale ? \"visible\" : \"hidden\");\n", + " };\n", + "\n", + " root.select(\".\" + axis + \"gridlines\").selectAll(\"g\").forEach(mark_inscale_gridlines);\n", + " root.select(\".\" + axis + \"labels\").selectAll(\"g\").forEach(mark_inscale_labels);\n", + " }\n", + "};\n", + "\n", + "\n", + "var set_plot_pan_zoom = function(root, tx, ty, xscale, yscale) {\n", + " var old_xscale = root.data(\"xscale\"),\n", + " old_yscale = root.data(\"yscale\");\n", + " var bounds = root.plotbounds();\n", + "\n", + " var width = bounds.x1 - bounds.x0,\n", + " height = bounds.y1 - bounds.y0;\n", + "\n", + " // compute the viewport derived from tx, ty, xscale, and yscale\n", + " var x_min = -width * xscale - (xscale * width - width),\n", + " x_max = width * xscale,\n", + " y_min = -height * yscale - (yscale * height - height),\n", + " y_max = height * yscale;\n", + "\n", + " var x0 = bounds.x0 - xscale * bounds.x0,\n", + " y0 = bounds.y0 - yscale * bounds.y0;\n", + "\n", + " var tx = Math.max(Math.min(tx - x0, x_max), x_min),\n", + " ty = Math.max(Math.min(ty - y0, y_max), y_min);\n", + "\n", + " tx += x0;\n", + " ty += y0;\n", + "\n", + " // when the scale changes, we may need to alter which set of\n", + " // ticks are being displayed\n", + " if (xscale != old_xscale) {\n", + " update_tickscale(root, xscale, \"x\");\n", + " }\n", + " if (yscale != old_yscale) {\n", + " update_tickscale(root, yscale, \"y\");\n", + " }\n", + "\n", + " set_geometry_transform(root, tx, ty, xscale, yscale);\n", + "\n", + " root.data(\"xscale\", xscale);\n", + " root.data(\"yscale\", yscale);\n", + " root.data(\"tx\", tx);\n", + " root.data(\"ty\", ty);\n", + "};\n", + "\n", + "\n", + "var scale_centered_translation = function(root, xscale, yscale) {\n", + " var bounds = root.plotbounds();\n", + "\n", + " var width = bounds.x1 - bounds.x0,\n", + " height = bounds.y1 - bounds.y0;\n", + "\n", + " var tx0 = root.data(\"tx\"),\n", + " ty0 = root.data(\"ty\");\n", + "\n", + " var xscale0 = root.data(\"xscale\"),\n", + " yscale0 = root.data(\"yscale\");\n", + "\n", + " // how off from center the current view is\n", + " var xoff = tx0 - (bounds.x0 * (1 - xscale0) + (width * (1 - xscale0)) / 2),\n", + " yoff = ty0 - (bounds.y0 * (1 - yscale0) + (height * (1 - yscale0)) / 2);\n", + "\n", + " // rescale offsets\n", + " xoff = xoff * xscale / xscale0;\n", + " yoff = yoff * yscale / yscale0;\n", + "\n", + " // adjust for the panel position being scaled\n", + " var x_edge_adjust = bounds.x0 * (1 - xscale),\n", + " y_edge_adjust = bounds.y0 * (1 - yscale);\n", + "\n", + " return {\n", + " x: xoff + x_edge_adjust + (width - width * xscale) / 2,\n", + " y: yoff + y_edge_adjust + (height - height * yscale) / 2\n", + " };\n", + "};\n", + "\n", + "\n", + "// Initialize data for panning zooming if it isn't already.\n", + "var init_pan_zoom = function(root) {\n", + " if (root.data(\"zoompan-ready\")) {\n", + " return;\n", + " }\n", + "\n", + " root.data(\"crosshair\",false);\n", + "\n", + " // The non-scaling-stroke trick. Rather than try to correct for the\n", + " // stroke-width when zooming, we force it to a fixed value.\n", + " var px_per_mm = root.node.getCTM().a;\n", + "\n", + " // Drag events report deltas in pixels, which we'd like to convert to\n", + " // millimeters.\n", + " root.data(\"px_per_mm\", px_per_mm);\n", + "\n", + " root.selectAll(\"path\")\n", + " .forEach(function (element, i) {\n", + " sw = element.asPX(\"stroke-width\") * px_per_mm;\n", + " if (sw > 0) {\n", + " element.attribute(\"stroke-width\", sw);\n", + " element.attribute(\"vector-effect\", \"non-scaling-stroke\");\n", + " }\n", + " });\n", + "\n", + " // Store ticks labels original tranformation\n", + " root.selectAll(\".xlabels > g, .ylabels > g\")\n", + " .forEach(function (element, i) {\n", + " var lm = element.transform().localMatrix;\n", + " element.data(\"static_transform\",\n", + " new Snap.Matrix(lm.a, lm.b, lm.c, lm.d, lm.e, lm.f));\n", + " });\n", + "\n", + " var xgridlines = root.select(\".xgridlines\");\n", + " var ygridlines = root.select(\".ygridlines\");\n", + " var xlabels = root.select(\".xlabels\");\n", + " var ylabels = root.select(\".ylabels\");\n", + "\n", + " if (root.data(\"tx\") === undefined) root.data(\"tx\", 0);\n", + " if (root.data(\"ty\") === undefined) root.data(\"ty\", 0);\n", + " if (root.data(\"xscale\") === undefined) root.data(\"xscale\", 1.0);\n", + " if (root.data(\"yscale\") === undefined) root.data(\"yscale\", 1.0);\n", + " if (root.data(\"xtickscales\") === undefined) {\n", + "\n", + " // index all the tick scales that are listed\n", + " var xtickscales = {};\n", + " var ytickscales = {};\n", + " var add_x_tick_scales = function (element, i) {\n", + " if (element.attribute(\"gadfly:scale\")==null) { return; }\n", + " xtickscales[element.attribute(\"gadfly:scale\")] = true;\n", + " };\n", + " var add_y_tick_scales = function (element, i) {\n", + " if (element.attribute(\"gadfly:scale\")==null) { return; }\n", + " ytickscales[element.attribute(\"gadfly:scale\")] = true;\n", + " };\n", + "\n", + " if (xgridlines) xgridlines.selectAll(\"g\").forEach(add_x_tick_scales);\n", + " if (ygridlines) ygridlines.selectAll(\"g\").forEach(add_y_tick_scales);\n", + " if (xlabels) xlabels.selectAll(\"g\").forEach(add_x_tick_scales);\n", + " if (ylabels) ylabels.selectAll(\"g\").forEach(add_y_tick_scales);\n", + "\n", + " root.data(\"xtickscales\", xtickscales);\n", + " root.data(\"ytickscales\", ytickscales);\n", + " root.data(\"xtickscale\", 1.0);\n", + " root.data(\"ytickscale\", 1.0); // ???\n", + " }\n", + "\n", + " var min_scale = 1.0, max_scale = 1.0;\n", + " for (scale in xtickscales) {\n", + " min_scale = Math.min(min_scale, scale);\n", + " max_scale = Math.max(max_scale, scale);\n", + " }\n", + " for (scale in ytickscales) {\n", + " min_scale = Math.min(min_scale, scale);\n", + " max_scale = Math.max(max_scale, scale);\n", + " }\n", + " root.data(\"min_scale\", min_scale);\n", + " root.data(\"max_scale\", max_scale);\n", + "\n", + " // store the original positions of labels\n", + " if (xlabels) {\n", + " xlabels.selectAll(\"g\")\n", + " .forEach(function (element, i) {\n", + " element.data(\"x\", element.asPX(\"x\"));\n", + " });\n", + " }\n", + "\n", + " if (ylabels) {\n", + " ylabels.selectAll(\"g\")\n", + " .forEach(function (element, i) {\n", + " element.data(\"y\", element.asPX(\"y\"));\n", + " });\n", + " }\n", + "\n", + " // mark grid lines and ticks as in or out of scale.\n", + " var mark_inscale = function (element, i) {\n", + " if (element.attribute(\"gadfly:scale\") == null) { return; }\n", + " element.attribute(\"gadfly:inscale\", element.attribute(\"gadfly:scale\") == 1.0);\n", + " };\n", + "\n", + " if (xgridlines) xgridlines.selectAll(\"g\").forEach(mark_inscale);\n", + " if (ygridlines) ygridlines.selectAll(\"g\").forEach(mark_inscale);\n", + " if (xlabels) xlabels.selectAll(\"g\").forEach(mark_inscale);\n", + " if (ylabels) ylabels.selectAll(\"g\").forEach(mark_inscale);\n", + "\n", + " // figure out the upper ond lower bounds on panning using the maximum\n", + " // and minum grid lines\n", + " var bounds = root.plotbounds();\n", + " var pan_bounds = {\n", + " x0: 0.0,\n", + " y0: 0.0,\n", + " x1: 0.0,\n", + " y1: 0.0\n", + " };\n", + "\n", + " if (xgridlines) {\n", + " xgridlines\n", + " .selectAll(\"g\")\n", + " .forEach(function (element, i) {\n", + " if (element.attribute(\"gadfly:inscale\") == \"true\") {\n", + " var bbox = element.node.getBBox();\n", + " if (bounds.x1 - bbox.x < pan_bounds.x0) {\n", + " pan_bounds.x0 = bounds.x1 - bbox.x;\n", + " }\n", + " if (bounds.x0 - bbox.x > pan_bounds.x1) {\n", + " pan_bounds.x1 = bounds.x0 - bbox.x;\n", + " }\n", + " element.attr(\"visibility\", \"visible\");\n", + " }\n", + " });\n", + " }\n", + "\n", + " if (ygridlines) {\n", + " ygridlines\n", + " .selectAll(\"g\")\n", + " .forEach(function (element, i) {\n", + " if (element.attribute(\"gadfly:inscale\") == \"true\") {\n", + " var bbox = element.node.getBBox();\n", + " if (bounds.y1 - bbox.y < pan_bounds.y0) {\n", + " pan_bounds.y0 = bounds.y1 - bbox.y;\n", + " }\n", + " if (bounds.y0 - bbox.y > pan_bounds.y1) {\n", + " pan_bounds.y1 = bounds.y0 - bbox.y;\n", + " }\n", + " element.attr(\"visibility\", \"visible\");\n", + " }\n", + " });\n", + " }\n", + "\n", + " // nudge these values a little\n", + " pan_bounds.x0 -= 5;\n", + " pan_bounds.x1 += 5;\n", + " pan_bounds.y0 -= 5;\n", + " pan_bounds.y1 += 5;\n", + " root.data(\"pan_bounds\", pan_bounds);\n", + "\n", + " root.data(\"zoompan-ready\", true)\n", + "};\n", + "\n", + "\n", + "// drag actions, i.e. zooming and panning\n", + "var pan_action = {\n", + " start: function(root, x, y, event) {\n", + " root.data(\"dx\", 0);\n", + " root.data(\"dy\", 0);\n", + " root.data(\"tx0\", root.data(\"tx\"));\n", + " root.data(\"ty0\", root.data(\"ty\"));\n", + " },\n", + " update: function(root, dx, dy, x, y, event) {\n", + " var px_per_mm = root.data(\"px_per_mm\");\n", + " dx /= px_per_mm;\n", + " dy /= px_per_mm;\n", + "\n", + " var tx0 = root.data(\"tx\"),\n", + " ty0 = root.data(\"ty\");\n", + "\n", + " var dx0 = root.data(\"dx\"),\n", + " dy0 = root.data(\"dy\");\n", + "\n", + " root.data(\"dx\", dx);\n", + " root.data(\"dy\", dy);\n", + "\n", + " dx = dx - dx0;\n", + " dy = dy - dy0;\n", + "\n", + " var tx = tx0 + dx,\n", + " ty = ty0 + dy;\n", + "\n", + " set_plot_pan_zoom(root, tx, ty, root.data(\"xscale\"), root.data(\"yscale\"));\n", + " },\n", + " end: function(root, event) {\n", + "\n", + " },\n", + " cancel: function(root) {\n", + " set_plot_pan_zoom(root, root.data(\"tx0\"), root.data(\"ty0\"),\n", + " root.data(\"xscale\"), root.data(\"yscale\"));\n", + " }\n", + "};\n", + "\n", + "var zoom_box;\n", + "var zoom_action = {\n", + " start: function(root, _x, _y, event) {\n", + " var bounds = root.plotbounds();\n", + " // _x and _y are co-ordinates relative to page, which caused problems\n", + " // unless the SVG is precisely at the top-left of the page\n", + " var viewbounds = root.viewportplotbounds();\n", + " var x = event.clientX - viewbounds.x0;\n", + " var y = event.clientY - viewbounds.y0;\n", + "\n", + " var width = bounds.x1 - bounds.x0,\n", + " height = bounds.y1 - bounds.y0;\n", + " var xscalable = root.hasClass(\"xscalable\"),\n", + " yscalable = root.hasClass(\"yscalable\");\n", + " var px_per_mm = root.data(\"px_per_mm\");\n", + " x = xscalable ? x / px_per_mm : bounds.x0;\n", + " y = yscalable ? y / px_per_mm : bounds.y0;\n", + " var w = xscalable ? 0 : width;\n", + " var h = yscalable ? 0 : height;\n", + " zoom_box = root.rect(x, y, w, h).attr({\n", + " \"fill\": \"#000\",\n", + " \"fill-opacity\": 0.25\n", + " });\n", + " },\n", + " update: function(root, dx, dy, _x, _y, event) {\n", + " var xscalable = root.hasClass(\"xscalable\"),\n", + " yscalable = root.hasClass(\"yscalable\");\n", + " var px_per_mm = root.data(\"px_per_mm\");\n", + " var bounds = root.plotbounds();\n", + " var viewbounds = root.viewportplotbounds();\n", + " var x = event.clientX - viewbounds.x0;\n", + " var y = event.clientY - viewbounds.y0;\n", + " if (yscalable) {\n", + " y /= px_per_mm;\n", + " y = Math.max(bounds.y0, y);\n", + " y = Math.min(bounds.y1, y);\n", + " } else {\n", + " y = bounds.y1;\n", + " }\n", + " if (xscalable) {\n", + " x /= px_per_mm;\n", + " x = Math.max(bounds.x0, x);\n", + " x = Math.min(bounds.x1, x);\n", + " } else {\n", + " x = bounds.x1;\n", + " }\n", + "\n", + " dx = x - zoom_box.attr(\"x\");\n", + " dy = y - zoom_box.attr(\"y\");\n", + " var xoffset = 0,\n", + " yoffset = 0;\n", + " if (dx < 0) {\n", + " xoffset = dx;\n", + " dx = -1 * dx;\n", + " }\n", + " if (dy < 0) {\n", + " yoffset = dy;\n", + " dy = -1 * dy;\n", + " }\n", + " if (isNaN(dy)) {\n", + " dy = 0.0;\n", + " }\n", + " if (isNaN(dx)) {\n", + " dx = 0.0;\n", + " }\n", + " zoom_box.transform(\"T\" + xoffset + \",\" + yoffset);\n", + " zoom_box.attr(\"width\", dx);\n", + " zoom_box.attr(\"height\", dy);\n", + " },\n", + " end: function(root, event) {\n", + " var xscalable = root.hasClass(\"xscalable\"),\n", + " yscalable = root.hasClass(\"yscalable\");\n", + " var zoom_bounds = zoom_box.getBBox();\n", + " if (zoom_bounds.width * zoom_bounds.height <= 0) {\n", + " return;\n", + " }\n", + " var plot_bounds = root.plotbounds();\n", + " var xzoom_factor = 1.0,\n", + " yzoom_factor = 1.0;\n", + " if (xscalable) {\n", + " xzoom_factor = (plot_bounds.x1 - plot_bounds.x0) / zoom_bounds.width;\n", + " }\n", + " if (yscalable) {\n", + " yzoom_factor = (plot_bounds.y1 - plot_bounds.y0) / zoom_bounds.height;\n", + " }\n", + " var tx = (root.data(\"tx\") - zoom_bounds.x) * xzoom_factor + plot_bounds.x0,\n", + " ty = (root.data(\"ty\") - zoom_bounds.y) * yzoom_factor + plot_bounds.y0;\n", + " set_plot_pan_zoom(root, tx, ty,\n", + " root.data(\"xscale\") * xzoom_factor, root.data(\"yscale\") * yzoom_factor);\n", + " zoom_box.remove();\n", + " },\n", + " cancel: function(root) {\n", + " zoom_box.remove();\n", + " }\n", + "};\n", + "\n", + "\n", + "Gadfly.guide_background_drag_onstart = function(x, y, event) {\n", + " var root = this.plotroot();\n", + " var scalable = root.hasClass(\"xscalable\") || root.hasClass(\"yscalable\");\n", + " var zoomable = !event.altKey && !event.ctrlKey && event.shiftKey && scalable;\n", + " var panable = !event.altKey && !event.ctrlKey && !event.shiftKey && scalable;\n", + " var drag_action = zoomable ? zoom_action :\n", + " panable ? pan_action :\n", + " undefined;\n", + " root.data(\"drag_action\", drag_action);\n", + " if (drag_action) {\n", + " var cancel_drag_action = function(event) {\n", + " if (event.which == 27) { // esc key\n", + " drag_action.cancel(root);\n", + " root.data(\"drag_action\", undefined);\n", + " }\n", + " };\n", + " window.addEventListener(\"keyup\", cancel_drag_action);\n", + " root.data(\"cancel_drag_action\", cancel_drag_action);\n", + " drag_action.start(root, x, y, event);\n", + " }\n", + "};\n", + "\n", + "\n", + "Gadfly.guide_background_drag_onmove = function(dx, dy, x, y, event) {\n", + " var root = this.plotroot();\n", + " var drag_action = root.data(\"drag_action\");\n", + " if (drag_action) {\n", + " drag_action.update(root, dx, dy, x, y, event);\n", + " }\n", + "};\n", + "\n", + "\n", + "Gadfly.guide_background_drag_onend = function(event) {\n", + " var root = this.plotroot();\n", + " window.removeEventListener(\"keyup\", root.data(\"cancel_drag_action\"));\n", + " root.data(\"cancel_drag_action\", undefined);\n", + " var drag_action = root.data(\"drag_action\");\n", + " if (drag_action) {\n", + " drag_action.end(root, event);\n", + " }\n", + " root.data(\"drag_action\", undefined);\n", + "};\n", + "\n", + "\n", + "Gadfly.guide_background_scroll = function(event) {\n", + " if (event.shiftKey) {\n", + " // event.deltaY is either the number of pixels, lines, or pages scrolled past.\n", + " var actual_delta;\n", + " switch (event.deltaMode) {\n", + " case 0: // Chromium-based\n", + " actual_delta = -event.deltaY / 1000.0;\n", + " break;\n", + " case 1: // Firefox\n", + " actual_delta = -event.deltaY / 50.0;\n", + " break;\n", + " default:\n", + " actual_delta = -event.deltaY;\n", + " }\n", + " // Assumes 20 pixels/line to get reasonably consistent cross-browser behaviour.\n", + " increase_zoom_by_position(this.plotroot(), actual_delta);\n", + " event.preventDefault();\n", + " }\n", + "};\n", + "\n", + "// Map slider position x to scale y using the function y = a*exp(b*x)+c.\n", + "// The constants a, b, and c are solved using the constraint that the function\n", + "// should go through the points (0; min_scale), (0.5; 1), and (1; max_scale).\n", + "var scale_from_slider_position = function(position, min_scale, max_scale) {\n", + " if (min_scale==max_scale) { return 1; }\n", + " var a = (1 - 2 * min_scale + min_scale * min_scale) / (min_scale + max_scale - 2),\n", + " b = 2 * Math.log((max_scale - 1) / (1 - min_scale)),\n", + " c = (min_scale * max_scale - 1) / (min_scale + max_scale - 2);\n", + " return a * Math.exp(b * position) + c;\n", + "}\n", + "\n", + "// inverse of scale_from_slider_position\n", + "var slider_position_from_scale = function(scale, min_scale, max_scale) {\n", + " if (min_scale==max_scale) { return min_scale; }\n", + " var a = (1 - 2 * min_scale + min_scale * min_scale) / (min_scale + max_scale - 2),\n", + " b = 2 * Math.log((max_scale - 1) / (1 - min_scale)),\n", + " c = (min_scale * max_scale - 1) / (min_scale + max_scale - 2);\n", + " return 1 / b * Math.log((scale - c) / a);\n", + "}\n", + "\n", + "var increase_zoom_by_position = function(root, delta_position, animate) {\n", + " var old_xscale = root.data(\"xscale\"),\n", + " old_yscale = root.data(\"yscale\"),\n", + " min_scale = root.data(\"min_scale\"),\n", + " max_scale = root.data(\"max_scale\");\n", + " var xposition = slider_position_from_scale(old_xscale, min_scale, max_scale),\n", + " yposition = slider_position_from_scale(old_yscale, min_scale, max_scale);\n", + " xposition += (root.hasClass(\"xscalable\") ? delta_position : 0.0);\n", + " yposition += (root.hasClass(\"yscalable\") ? delta_position : 0.0);\n", + " old_xscale = scale_from_slider_position(xposition, min_scale, max_scale);\n", + " old_yscale = scale_from_slider_position(yposition, min_scale, max_scale);\n", + " var new_xscale = Math.max(min_scale, Math.min(old_xscale, max_scale)),\n", + " new_yscale = Math.max(min_scale, Math.min(old_yscale, max_scale));\n", + " if (animate) {\n", + " Snap.animate(\n", + " [old_xscale, old_yscale],\n", + " [new_xscale, new_yscale],\n", + " function (new_scale) {\n", + " update_plot_scale(root, new_scale[0], new_scale[1]);\n", + " },\n", + " 200);\n", + " } else {\n", + " update_plot_scale(root, new_xscale, new_yscale);\n", + " }\n", + "}\n", + "\n", + "\n", + "var update_plot_scale = function(root, new_xscale, new_yscale) {\n", + " var trans = scale_centered_translation(root, new_xscale, new_yscale);\n", + " set_plot_pan_zoom(root, trans.x, trans.y, new_xscale, new_yscale);\n", + "};\n", + "\n", + "\n", + "var toggle_color_class = function(root, color_class, ison) {\n", + " var escaped_color_class = color_class.replace(/([^0-9a-zA-z])/g,\"\\\\$1\");\n", + " var guides = root.selectAll(\".guide.\" + escaped_color_class + \",.guide .\" + escaped_color_class);\n", + " var geoms = root.selectAll(\".geometry.\" + escaped_color_class + \",.geometry .\" + escaped_color_class);\n", + " if (ison) {\n", + " guides.animate({opacity: 0.5}, 250);\n", + " geoms.animate({opacity: 0.0}, 250);\n", + " } else {\n", + " guides.animate({opacity: 1.0}, 250);\n", + " geoms.animate({opacity: 1.0}, 250);\n", + " }\n", + "};\n", + "\n", + "\n", + "Gadfly.colorkey_swatch_click = function(event) {\n", + " var root = this.plotroot();\n", + " var color_class = this.data(\"color_class\");\n", + "\n", + " if (event.shiftKey) {\n", + " root.selectAll(\".colorkey g\")\n", + " .forEach(function (element) {\n", + " var other_color_class = element.data(\"color_class\");\n", + " if (typeof other_color_class !== 'undefined' && other_color_class != color_class) {\n", + " toggle_color_class(root, other_color_class,\n", + " element.attr(\"opacity\") == 1.0);\n", + " }\n", + " });\n", + " } else {\n", + " toggle_color_class(root, color_class, this.attr(\"opacity\") == 1.0);\n", + " }\n", + "};\n", + "\n", + "\n", + "return Gadfly;\n", + "\n", + "}));\n", + "\n", + "\n", + "//@ sourceURL=gadfly.js\n", + "\n", + "(function (glob, factory) {\n", + " // AMD support\n", + " if (typeof require === \"function\" && typeof define === \"function\" && define.amd) {\n", + " require([\"Snap.svg\", \"Gadfly\"], function (Snap, Gadfly) {\n", + " factory(Snap, Gadfly);\n", + " });\n", + " } else {\n", + " factory(glob.Snap, glob.Gadfly);\n", + " }\n", + "})(window, function (Snap, Gadfly) {\n", + " var fig = Snap(\"#img-8b5f83f9\");\n", + "fig.select(\"#img-8b5f83f9-5\")\n", + " .init_gadfly();\n", + "fig.select(\"#img-8b5f83f9-8\")\n", + " .plotroot().data(\"unfocused_ygrid_color\", \"#D0D0E0\")\n", + ";\n", + "fig.select(\"#img-8b5f83f9-8\")\n", + " .plotroot().data(\"focused_ygrid_color\", \"#A0A0A0\")\n", + ";\n", + "fig.select(\"#img-8b5f83f9-162\")\n", + " .plotroot().data(\"unfocused_xgrid_color\", \"#D0D0E0\")\n", + ";\n", + "fig.select(\"#img-8b5f83f9-162\")\n", + " .plotroot().data(\"focused_xgrid_color\", \"#A0A0A0\")\n", + ";\n", + "fig.select(\"#img-8b5f83f9-207\")\n", + " .mouseenter(Gadfly.helpscreen_visible)\n", + ".mouseleave(Gadfly.helpscreen_hidden)\n", + ";\n", + "fig.select(\"#img-8b5f83f9-375\")\n", + " .init_gadfly();\n", + "fig.select(\"#img-8b5f83f9-378\")\n", + " .plotroot().data(\"unfocused_ygrid_color\", \"#D0D0E0\")\n", + ";\n", + "fig.select(\"#img-8b5f83f9-378\")\n", + " .plotroot().data(\"focused_ygrid_color\", \"#A0A0A0\")\n", + ";\n", + "fig.select(\"#img-8b5f83f9-531\")\n", + " .plotroot().data(\"unfocused_xgrid_color\", \"#D0D0E0\")\n", + ";\n", + "fig.select(\"#img-8b5f83f9-531\")\n", + " .plotroot().data(\"focused_xgrid_color\", \"#A0A0A0\")\n", + ";\n", + "fig.select(\"#img-8b5f83f9-576\")\n", + " .mouseenter(Gadfly.helpscreen_visible)\n", + ".mouseleave(Gadfly.helpscreen_hidden)\n", + ";\n", + " });\n", + "]]> </script>\n", + "</svg>\n" + ], + "text/plain": [ + "Compose.Context(Measures.BoundingBox{Tuple{Measures.Length{:cx, Int64}, Measures.Length{:cy, Int64}}, Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}}((0cx, 0cy), (1.0w, 1.0h)), nothing, nothing, nothing, nothing, List([Compose.Context(Measures.BoundingBox{Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}, Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}}((0.0w, 0.5h), (1.0w, 0.5h)), nothing, nothing, nothing, nothing, List([Compose.Context(Measures.BoundingBox{Tuple{Measures.AbsoluteLength, Measures.AbsoluteLength}, Tuple{Measures.Add{Measures.Add{Measures.Length{:w, Float64}, Measures.AbsoluteLength}, Measures.AbsoluteLength}, Measures.Add{Measures.Add{Measures.Length{:h, Float64}, Measures.AbsoluteLength}, 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"\n", + "var yPX = function(fig, y) {\n", + " var client_box = fig.node.getBoundingClientRect();\n", + " return y * fig.node.viewBox.baseVal.height / client_box.height;\n", + "};\n", + "\n", + "\n", + "Snap.plugin(function (Snap, Element, Paper, global) {\n", + " // Traverse upwards from a snap element to find and return the first\n", + " // note with the \"plotroot\" class.\n", + " Element.prototype.plotroot = function () {\n", + " var element = this;\n", + " while (!element.hasClass(\"plotroot\") && element.parent() != null) {\n", + " element = element.parent();\n", + " }\n", + " return element;\n", + " };\n", + "\n", + " Element.prototype.svgroot = function () {\n", + " var element = this;\n", + " while (element.node.nodeName != \"svg\" && element.parent() != null) {\n", + " element = element.parent();\n", + " }\n", + " return element;\n", + " };\n", + "\n", + " Element.prototype.plotbounds = function () {\n", + " var root = this.plotroot()\n", + " var bbox = root.select(\".guide.background\").node.getBBox();\n", + " return {\n", + " x0: bbox.x,\n", + " x1: bbox.x + bbox.width,\n", + " y0: bbox.y,\n", + " y1: bbox.y + bbox.height\n", + " };\n", + " };\n", + "\n", + " Element.prototype.viewportplotbounds = function () {\n", + " var root = this.svgroot();\n", + " var bbox = root.node.getBoundingClientRect();\n", + " return {\n", + " x0: bbox.x,\n", + " x1: bbox.x + bbox.width,\n", + " y0: bbox.y,\n", + " y1: bbox.y + bbox.height\n", + " };\n", + " };\n", + "\n", + " Element.prototype.plotcenter = function () {\n", + " var root = this.plotroot()\n", + " var bbox = root.select(\".guide.background\").node.getBBox();\n", + " return {\n", + " x: bbox.x + bbox.width / 2,\n", + " y: bbox.y + bbox.height / 2\n", + " };\n", + " };\n", + "\n", + " // Emulate IE style mouseenter/mouseleave events, since Microsoft always\n", + " // does everything right.\n", + " // See: http://www.dynamic-tools.net/toolbox/isMouseLeaveOrEnter/\n", + " var events = [\"mouseenter\", \"mouseleave\"];\n", + "\n", + " for (i in events) {\n", + " (function (event_name) {\n", + " var event_name = events[i];\n", + " Element.prototype[event_name] = function (fn, scope) {\n", + " if (Snap.is(fn, \"function\")) {\n", + " var fn2 = function (event) {\n", + " if (event.type != \"mouseover\" && event.type != \"mouseout\") {\n", + " return;\n", + " }\n", + "\n", + " var reltg = event.relatedTarget ? event.relatedTarget :\n", + " event.type == \"mouseout\" ? event.toElement : event.fromElement;\n", + " while (reltg && reltg != this.node) reltg = reltg.parentNode;\n", + "\n", + " if (reltg != this.node) {\n", + " return fn.apply(this, event);\n", + " }\n", + " };\n", + "\n", + " if (event_name == \"mouseenter\") {\n", + " this.mouseover(fn2, scope);\n", + " } else {\n", + " this.mouseout(fn2, scope);\n", + " }\n", + " }\n", + " return this;\n", + " };\n", + " })(events[i]);\n", + " }\n", + "\n", + "\n", + " Element.prototype.mousewheel = function (fn, scope) {\n", + " if (Snap.is(fn, \"function\")) {\n", + " var el = this;\n", + " var fn2 = function (event) {\n", + " fn.apply(el, [event]);\n", + " };\n", + " }\n", + "\n", + " this.node.addEventListener(\"wheel\", fn2);\n", + "\n", + " return this;\n", + " };\n", + "\n", + "\n", + " // Snap's attr function can be too slow for things like panning/zooming.\n", + " // This is a function to directly update element attributes without going\n", + " // through eve.\n", + " Element.prototype.attribute = function(key, val) {\n", + " if (val === undefined) {\n", + " return this.node.getAttribute(key);\n", + " } else {\n", + " this.node.setAttribute(key, val);\n", + " return this;\n", + " }\n", + " };\n", + "\n", + " Element.prototype.init_gadfly = function() {\n", + " this.mouseenter(Gadfly.plot_mouseover)\n", + " .mousemove(Gadfly.plot_mousemove)\n", + " .mouseleave(Gadfly.plot_mouseout)\n", + " .dblclick(Gadfly.plot_dblclick)\n", + " .mousewheel(Gadfly.guide_background_scroll)\n", + " .drag(Gadfly.guide_background_drag_onmove,\n", + " Gadfly.guide_background_drag_onstart,\n", + " Gadfly.guide_background_drag_onend);\n", + " this.mouseenter(function (event) {\n", + " init_pan_zoom(this.plotroot());\n", + " });\n", + " return this;\n", + " };\n", + "});\n", + "\n", + "\n", + "Gadfly.plot_mousemove = function(event, _x_px, _y_px) {\n", + " var root = this.plotroot();\n", + " var viewbounds = root.viewportplotbounds();\n", + "\n", + " // (_x_px, _y_px) are offsets relative to page (event.layerX, event.layerY) rather than viewport\n", + " var x_px = event.clientX - viewbounds.x0;\n", + " var y_px = event.clientY - viewbounds.y0;\n", + " if (root.data(\"crosshair\")) {\n", + " px_per_mm = root.data(\"px_per_mm\");\n", + " bB = root.select('boundingbox').node.getAttribute('value').split(' ');\n", + " uB = root.select('unitbox').node.getAttribute('value').split(' ');\n", + " xscale = root.data(\"xscale\");\n", + " yscale = root.data(\"yscale\");\n", + " xtranslate = root.data(\"tx\");\n", + " ytranslate = root.data(\"ty\");\n", + "\n", + " xoff_mm = bB[0].substr(0,bB[0].length-2)/1;\n", + " yoff_mm = bB[1].substr(0,bB[1].length-2)/1;\n", + " xoff_unit = uB[0]/1;\n", + " yoff_unit = uB[1]/1;\n", + " mm_per_xunit = bB[2].substr(0,bB[2].length-2) / uB[2];\n", + " mm_per_yunit = bB[3].substr(0,bB[3].length-2) / uB[3];\n", + " \n", + " x_unit = ((x_px / px_per_mm - xtranslate) / xscale - xoff_mm) / mm_per_xunit + xoff_unit;\n", + " y_unit = ((y_px / px_per_mm - ytranslate) / yscale - yoff_mm) / mm_per_yunit + yoff_unit;\n", + "\n", + " root.select('.crosshair').select('.primitive').select('text')\n", + " .node.innerHTML = x_unit.toPrecision(3)+\",\"+y_unit.toPrecision(3);\n", + " };\n", + "};\n", + "\n", + "Gadfly.helpscreen_visible = function(event) {\n", + " helpscreen_visible(this.plotroot());\n", + "};\n", + "var helpscreen_visible = function(root) {\n", + " root.select(\".helpscreen\").animate({\"fill-opacity\": 1.0}, 250);\n", + "};\n", + "\n", + "Gadfly.helpscreen_hidden = function(event) {\n", + " helpscreen_hidden(this.plotroot());\n", + "};\n", + "var helpscreen_hidden = function(root) {\n", + " root.select(\".helpscreen\").animate({\"fill-opacity\": 0.0}, 250);\n", + "};\n", + "\n", + "// When the plot is moused over, emphasize the grid lines.\n", + "Gadfly.plot_mouseover = function(event) {\n", + " var root = this.plotroot();\n", + "\n", + " var keyboard_help = function(event) {\n", + " if (event.which == 191) { // ?\n", + " helpscreen_visible(root);\n", + " }\n", + " };\n", + " root.data(\"keyboard_help\", keyboard_help);\n", + " window.addEventListener(\"keydown\", keyboard_help);\n", + "\n", + " var keyboard_pan_zoom = function(event) {\n", + " var bounds = root.plotbounds(),\n", + " width = bounds.x1 - bounds.x0;\n", + " height = bounds.y1 - bounds.y0;\n", + " if (event.which == 187 || event.which == 73) { // plus or i\n", + " increase_zoom_by_position(root, 0.1, true);\n", + " } else if (event.which == 189 || event.which == 79) { // minus or o\n", + " increase_zoom_by_position(root, -0.1, true);\n", + " } else if (event.which == 39 || event.which == 76) { // right-arrow or l\n", + " set_plot_pan_zoom(root, root.data(\"tx\")-width/10, root.data(\"ty\"),\n", + " root.data(\"xscale\"), root.data(\"yscale\"));\n", + " } else if (event.which == 40 || event.which == 74) { // down-arrow or j\n", + " set_plot_pan_zoom(root, root.data(\"tx\"), root.data(\"ty\")-height/10,\n", + " root.data(\"xscale\"), root.data(\"yscale\"));\n", + " } else if (event.which == 37 || event.which == 72) { // left-arrow or h\n", + " set_plot_pan_zoom(root, root.data(\"tx\")+width/10, root.data(\"ty\"),\n", + " root.data(\"xscale\"), root.data(\"yscale\"));\n", + " } else if (event.which == 38 || event.which == 75) { // up-arrow or k\n", + " set_plot_pan_zoom(root, root.data(\"tx\"), root.data(\"ty\")+height/10,\n", + " root.data(\"xscale\"), root.data(\"yscale\"));\n", + " } else if (event.which == 82) { // r\n", + " set_plot_pan_zoom(root, 0.0, 0.0, 1.0, 1.0);\n", + " } else if (event.which == 191) { // ?\n", + " helpscreen_hidden(root);\n", + " } else if (event.which == 67) { // c\n", + " root.data(\"crosshair\",!root.data(\"crosshair\"));\n", + " root.select(\".crosshair\")\n", + " .animate({\"fill-opacity\": root.data(\"crosshair\") ? 1.0 : 0.0}, 250);\n", + " }\n", + " };\n", + " root.data(\"keyboard_pan_zoom\", keyboard_pan_zoom);\n", + " window.addEventListener(\"keyup\", keyboard_pan_zoom);\n", + "\n", + " var xgridlines = root.select(\".xgridlines\"),\n", + " ygridlines = root.select(\".ygridlines\");\n", + "\n", + " if (xgridlines) {\n", + " xgridlines.data(\"unfocused_strokedash\",\n", + " xgridlines.attribute(\"stroke-dasharray\").replace(/(\\d)(,|$)/g, \"$1mm$2\"));\n", + " var destcolor = root.data(\"focused_xgrid_color\");\n", + " xgridlines.attribute(\"stroke-dasharray\", \"none\")\n", + " .selectAll(\"path\")\n", + " .animate({stroke: destcolor}, 250);\n", + " }\n", + "\n", + " if (ygridlines) {\n", + " ygridlines.data(\"unfocused_strokedash\",\n", + " ygridlines.attribute(\"stroke-dasharray\").replace(/(\\d)(,|$)/g, \"$1mm$2\"));\n", + " var destcolor = root.data(\"focused_ygrid_color\");\n", + " ygridlines.attribute(\"stroke-dasharray\", \"none\")\n", + " .selectAll(\"path\")\n", + " .animate({stroke: destcolor}, 250);\n", + " }\n", + "\n", + " root.select(\".crosshair\")\n", + " .animate({\"fill-opacity\": root.data(\"crosshair\") ? 1.0 : 0.0}, 250);\n", + " root.select(\".questionmark\").animate({\"fill-opacity\": 1.0}, 250);\n", + "};\n", + "\n", + "// Reset pan and zoom on double click\n", + "Gadfly.plot_dblclick = function(event) {\n", + " set_plot_pan_zoom(this.plotroot(), 0.0, 0.0, 1.0, 1.0);\n", + "};\n", + "\n", + "// Unemphasize grid lines on mouse out.\n", + "Gadfly.plot_mouseout = function(event) {\n", + " var root = this.plotroot();\n", + "\n", + " window.removeEventListener(\"keyup\", root.data(\"keyboard_pan_zoom\"));\n", + " root.data(\"keyboard_pan_zoom\", undefined);\n", + " window.removeEventListener(\"keydown\", root.data(\"keyboard_help\"));\n", + " root.data(\"keyboard_help\", undefined);\n", + "\n", + " var xgridlines = root.select(\".xgridlines\"),\n", + " ygridlines = root.select(\".ygridlines\");\n", + "\n", + " if (xgridlines) {\n", + " var destcolor = root.data(\"unfocused_xgrid_color\");\n", + " xgridlines.attribute(\"stroke-dasharray\", xgridlines.data(\"unfocused_strokedash\"))\n", + " .selectAll(\"path\")\n", + " .animate({stroke: destcolor}, 250);\n", + " }\n", + "\n", + " if (ygridlines) {\n", + " var destcolor = root.data(\"unfocused_ygrid_color\");\n", + " ygridlines.attribute(\"stroke-dasharray\", ygridlines.data(\"unfocused_strokedash\"))\n", + " .selectAll(\"path\")\n", + " .animate({stroke: destcolor}, 250);\n", + " }\n", + "\n", + " root.select(\".crosshair\").animate({\"fill-opacity\": 0.0}, 250);\n", + " root.select(\".questionmark\").animate({\"fill-opacity\": 0.0}, 250);\n", + " helpscreen_hidden(root);\n", + "};\n", + "\n", + "\n", + "var set_geometry_transform = function(root, tx, ty, xscale, yscale) {\n", + " var xscalable = root.hasClass(\"xscalable\"),\n", + " yscalable = root.hasClass(\"yscalable\");\n", + "\n", + " var old_xscale = root.data(\"xscale\"),\n", + " old_yscale = root.data(\"yscale\");\n", + "\n", + " var xscale = xscalable ? xscale : 1.0,\n", + " yscale = yscalable ? yscale : 1.0;\n", + "\n", + " tx = xscalable ? tx : 0.0;\n", + " ty = yscalable ? ty : 0.0;\n", + "\n", + " var t = new Snap.Matrix().translate(tx, ty).scale(xscale, yscale);\n", + " root.selectAll(\".geometry, image\").forEach(function (element, i) {\n", + " element.transform(t);\n", + " });\n", + "\n", + " var t = new Snap.Matrix().scale(1.0/xscale, 1.0/yscale);\n", + " root.selectAll('.marker').forEach(function (element, i) {\n", + " element.selectAll('.primitive').forEach(function (element, i) {\n", + " element.transform(t);\n", + " }) });\n", + "\n", + " bounds = root.plotbounds();\n", + " px_per_mm = root.data(\"px_per_mm\");\n", + "\n", + " if (yscalable) {\n", + " var xfixed_t = new Snap.Matrix().translate(0, ty).scale(1.0, yscale);\n", + " root.selectAll(\".xfixed\")\n", + " .forEach(function (element, i) {\n", + " element.transform(xfixed_t);\n", + " });\n", + "\n", + " ylabels = root.select(\".ylabels\");\n", + " if (ylabels) {\n", + " ylabels.transform(xfixed_t)\n", + " .selectAll(\"g\")\n", + " .forEach(function (element, i) {\n", + " if (element.attribute(\"gadfly:inscale\") == \"true\") {\n", + " unscale_t = new Snap.Matrix();\n", + " unscale_t.scale(1, 1/yscale);\n", + " element.select(\"text\").transform(unscale_t);\n", + " \n", + " var y = element.attr(\"transform\").globalMatrix.f / px_per_mm;\n", + " element.attr(\"visibility\",\n", + " bounds.y0 <= y && y <= bounds.y1 ? \"visible\" : \"hidden\");\n", + " }\n", + " });\n", + " }\n", + " }\n", + "\n", + " if (xscalable) {\n", + " var yfixed_t = new Snap.Matrix().translate(tx, 0).scale(xscale, 1.0);\n", + " var xtrans = new Snap.Matrix().translate(tx, 0);\n", + " root.selectAll(\".yfixed\")\n", + " .forEach(function (element, i) {\n", + " element.transform(yfixed_t);\n", + " });\n", + "\n", + " xlabels = root.select(\".xlabels\");\n", + " if (xlabels) {\n", + " xlabels.transform(yfixed_t)\n", + " .selectAll(\"g\")\n", + " .forEach(function (element, i) {\n", + " if (element.attribute(\"gadfly:inscale\") == \"true\") {\n", + " unscale_t = new Snap.Matrix();\n", + " unscale_t.scale(1/xscale, 1);\n", + " element.select(\"text\").transform(unscale_t);\n", + "\n", + " var x = element.attr(\"transform\").globalMatrix.e / px_per_mm;\n", + " element.attr(\"visibility\",\n", + " bounds.x0 <= x && x <= bounds.x1 ? \"visible\" : \"hidden\");\n", + " }\n", + " });\n", + " }\n", + " }\n", + "};\n", + "\n", + "\n", + "// Find the most appropriate tick scale and update label visibility.\n", + "var update_tickscale = function(root, scale, axis) {\n", + " if (!root.hasClass(axis + \"scalable\")) return;\n", + "\n", + " var tickscales = root.data(axis + \"tickscales\");\n", + " var best_tickscale = 1.0;\n", + " var best_tickscale_dist = Infinity;\n", + " for (tickscale in tickscales) {\n", + " var dist = Math.abs(Math.log(tickscale) - Math.log(scale));\n", + " if (dist < best_tickscale_dist) {\n", + " best_tickscale_dist = dist;\n", + " best_tickscale = tickscale;\n", + " }\n", + " }\n", + "\n", + " if (best_tickscale != root.data(axis + \"tickscale\")) {\n", + " root.data(axis + \"tickscale\", best_tickscale);\n", + " var mark_inscale_gridlines = function (element, i) {\n", + " if (element.attribute(\"gadfly:inscale\") == null) { return; }\n", + " var inscale = element.attr(\"gadfly:scale\") == best_tickscale;\n", + " element.attribute(\"gadfly:inscale\", inscale);\n", + " element.attr(\"visibility\", inscale ? \"visible\" : \"hidden\");\n", + " };\n", + "\n", + " var mark_inscale_labels = function (element, i) {\n", + " if (element.attribute(\"gadfly:inscale\") == null) { return; }\n", + " var inscale = element.attr(\"gadfly:scale\") == best_tickscale;\n", + " element.attribute(\"gadfly:inscale\", inscale);\n", + " element.attr(\"visibility\", inscale ? \"visible\" : \"hidden\");\n", + " };\n", + "\n", + " root.select(\".\" + axis + \"gridlines\").selectAll(\"g\").forEach(mark_inscale_gridlines);\n", + " root.select(\".\" + axis + \"labels\").selectAll(\"g\").forEach(mark_inscale_labels);\n", + " }\n", + "};\n", + "\n", + "\n", + "var set_plot_pan_zoom = function(root, tx, ty, xscale, yscale) {\n", + " var old_xscale = root.data(\"xscale\"),\n", + " old_yscale = root.data(\"yscale\");\n", + " var bounds = root.plotbounds();\n", + "\n", + " var width = bounds.x1 - bounds.x0,\n", + " height = bounds.y1 - bounds.y0;\n", + "\n", + " // compute the viewport derived from tx, ty, xscale, and yscale\n", + " var x_min = -width * xscale - (xscale * width - width),\n", + " x_max = width * xscale,\n", + " y_min = -height * yscale - (yscale * height - height),\n", + " y_max = height * yscale;\n", + "\n", + " var x0 = bounds.x0 - xscale * bounds.x0,\n", + " y0 = bounds.y0 - yscale * bounds.y0;\n", + "\n", + " var tx = Math.max(Math.min(tx - x0, x_max), x_min),\n", + " ty = Math.max(Math.min(ty - y0, y_max), y_min);\n", + "\n", + " tx += x0;\n", + " ty += y0;\n", + "\n", + " // when the scale changes, we may need to alter which set of\n", + " // ticks are being displayed\n", + " if (xscale != old_xscale) {\n", + " update_tickscale(root, xscale, \"x\");\n", + " }\n", + " if (yscale != old_yscale) {\n", + " update_tickscale(root, yscale, \"y\");\n", + " }\n", + "\n", + " set_geometry_transform(root, tx, ty, xscale, yscale);\n", + "\n", + " root.data(\"xscale\", xscale);\n", + " root.data(\"yscale\", yscale);\n", + " root.data(\"tx\", tx);\n", + " root.data(\"ty\", ty);\n", + "};\n", + "\n", + "\n", + "var scale_centered_translation = function(root, xscale, yscale) {\n", + " var bounds = root.plotbounds();\n", + "\n", + " var width = bounds.x1 - bounds.x0,\n", + " height = bounds.y1 - bounds.y0;\n", + "\n", + " var tx0 = root.data(\"tx\"),\n", + " ty0 = root.data(\"ty\");\n", + "\n", + " var xscale0 = root.data(\"xscale\"),\n", + " yscale0 = root.data(\"yscale\");\n", + "\n", + " // how off from center the current view is\n", + " var xoff = tx0 - (bounds.x0 * (1 - xscale0) + (width * (1 - xscale0)) / 2),\n", + " yoff = ty0 - (bounds.y0 * (1 - yscale0) + (height * (1 - yscale0)) / 2);\n", + "\n", + " // rescale offsets\n", + " xoff = xoff * xscale / xscale0;\n", + " yoff = yoff * yscale / yscale0;\n", + "\n", + " // adjust for the panel position being scaled\n", + " var x_edge_adjust = bounds.x0 * (1 - xscale),\n", + " y_edge_adjust = bounds.y0 * (1 - yscale);\n", + "\n", + " return {\n", + " x: xoff + x_edge_adjust + (width - width * xscale) / 2,\n", + " y: yoff + y_edge_adjust + (height - height * yscale) / 2\n", + " };\n", + "};\n", + "\n", + "\n", + "// Initialize data for panning zooming if it isn't already.\n", + "var init_pan_zoom = function(root) {\n", + " if (root.data(\"zoompan-ready\")) {\n", + " return;\n", + " }\n", + "\n", + " root.data(\"crosshair\",false);\n", + "\n", + " // The non-scaling-stroke trick. Rather than try to correct for the\n", + " // stroke-width when zooming, we force it to a fixed value.\n", + " var px_per_mm = root.node.getCTM().a;\n", + "\n", + " // Drag events report deltas in pixels, which we'd like to convert to\n", + " // millimeters.\n", + " root.data(\"px_per_mm\", px_per_mm);\n", + "\n", + " root.selectAll(\"path\")\n", + " .forEach(function (element, i) {\n", + " sw = element.asPX(\"stroke-width\") * px_per_mm;\n", + " if (sw > 0) {\n", + " element.attribute(\"stroke-width\", sw);\n", + " element.attribute(\"vector-effect\", \"non-scaling-stroke\");\n", + " }\n", + " });\n", + "\n", + " // Store ticks labels original tranformation\n", + " root.selectAll(\".xlabels > g, .ylabels > g\")\n", + " .forEach(function (element, i) {\n", + " var lm = element.transform().localMatrix;\n", + " element.data(\"static_transform\",\n", + " new Snap.Matrix(lm.a, lm.b, lm.c, lm.d, lm.e, lm.f));\n", + " });\n", + "\n", + " var xgridlines = root.select(\".xgridlines\");\n", + " var ygridlines = root.select(\".ygridlines\");\n", + " var xlabels = root.select(\".xlabels\");\n", + " var ylabels = root.select(\".ylabels\");\n", + "\n", + " if (root.data(\"tx\") === undefined) root.data(\"tx\", 0);\n", + " if (root.data(\"ty\") === undefined) root.data(\"ty\", 0);\n", + " if (root.data(\"xscale\") === undefined) root.data(\"xscale\", 1.0);\n", + " if (root.data(\"yscale\") === undefined) root.data(\"yscale\", 1.0);\n", + " if (root.data(\"xtickscales\") === undefined) {\n", + "\n", + " // index all the tick scales that are listed\n", + " var xtickscales = {};\n", + " var ytickscales = {};\n", + " var add_x_tick_scales = function (element, i) {\n", + " if (element.attribute(\"gadfly:scale\")==null) { return; }\n", + " xtickscales[element.attribute(\"gadfly:scale\")] = true;\n", + " };\n", + " var add_y_tick_scales = function (element, i) {\n", + " if (element.attribute(\"gadfly:scale\")==null) { return; }\n", + " ytickscales[element.attribute(\"gadfly:scale\")] = true;\n", + " };\n", + "\n", + " if (xgridlines) xgridlines.selectAll(\"g\").forEach(add_x_tick_scales);\n", + " if (ygridlines) ygridlines.selectAll(\"g\").forEach(add_y_tick_scales);\n", + " if (xlabels) xlabels.selectAll(\"g\").forEach(add_x_tick_scales);\n", + " if (ylabels) ylabels.selectAll(\"g\").forEach(add_y_tick_scales);\n", + "\n", + " root.data(\"xtickscales\", xtickscales);\n", + " root.data(\"ytickscales\", ytickscales);\n", + " root.data(\"xtickscale\", 1.0);\n", + " root.data(\"ytickscale\", 1.0); // ???\n", + " }\n", + "\n", + " var min_scale = 1.0, max_scale = 1.0;\n", + " for (scale in xtickscales) {\n", + " min_scale = Math.min(min_scale, scale);\n", + " max_scale = Math.max(max_scale, scale);\n", + " }\n", + " for (scale in ytickscales) {\n", + " min_scale = Math.min(min_scale, scale);\n", + " max_scale = Math.max(max_scale, scale);\n", + " }\n", + " root.data(\"min_scale\", min_scale);\n", + " root.data(\"max_scale\", max_scale);\n", + "\n", + " // store the original positions of labels\n", + " if (xlabels) {\n", + " xlabels.selectAll(\"g\")\n", + " .forEach(function (element, i) {\n", + " element.data(\"x\", element.asPX(\"x\"));\n", + " });\n", + " }\n", + "\n", + " if (ylabels) {\n", + " ylabels.selectAll(\"g\")\n", + " .forEach(function (element, i) {\n", + " element.data(\"y\", element.asPX(\"y\"));\n", + " });\n", + " }\n", + "\n", + " // mark grid lines and ticks as in or out of scale.\n", + " var mark_inscale = function (element, i) {\n", + " if (element.attribute(\"gadfly:scale\") == null) { return; }\n", + " element.attribute(\"gadfly:inscale\", element.attribute(\"gadfly:scale\") == 1.0);\n", + " };\n", + "\n", + " if (xgridlines) xgridlines.selectAll(\"g\").forEach(mark_inscale);\n", + " if (ygridlines) ygridlines.selectAll(\"g\").forEach(mark_inscale);\n", + " if (xlabels) xlabels.selectAll(\"g\").forEach(mark_inscale);\n", + " if (ylabels) ylabels.selectAll(\"g\").forEach(mark_inscale);\n", + "\n", + " // figure out the upper ond lower bounds on panning using the maximum\n", + " // and minum grid lines\n", + " var bounds = root.plotbounds();\n", + " var pan_bounds = {\n", + " x0: 0.0,\n", + " y0: 0.0,\n", + " x1: 0.0,\n", + " y1: 0.0\n", + " };\n", + "\n", + " if (xgridlines) {\n", + " xgridlines\n", + " .selectAll(\"g\")\n", + " .forEach(function (element, i) {\n", + " if (element.attribute(\"gadfly:inscale\") == \"true\") {\n", + " var bbox = element.node.getBBox();\n", + " if (bounds.x1 - bbox.x < pan_bounds.x0) {\n", + " pan_bounds.x0 = bounds.x1 - bbox.x;\n", + " }\n", + " if (bounds.x0 - bbox.x > pan_bounds.x1) {\n", + " pan_bounds.x1 = bounds.x0 - bbox.x;\n", + " }\n", + " element.attr(\"visibility\", \"visible\");\n", + " }\n", + " });\n", + " }\n", + "\n", + " if (ygridlines) {\n", + " ygridlines\n", + " .selectAll(\"g\")\n", + " .forEach(function (element, i) {\n", + " if (element.attribute(\"gadfly:inscale\") == \"true\") {\n", + " var bbox = element.node.getBBox();\n", + " if (bounds.y1 - bbox.y < pan_bounds.y0) {\n", + " pan_bounds.y0 = bounds.y1 - bbox.y;\n", + " }\n", + " if (bounds.y0 - bbox.y > pan_bounds.y1) {\n", + " pan_bounds.y1 = bounds.y0 - bbox.y;\n", + " }\n", + " element.attr(\"visibility\", \"visible\");\n", + " }\n", + " });\n", + " }\n", + "\n", + " // nudge these values a little\n", + " pan_bounds.x0 -= 5;\n", + " pan_bounds.x1 += 5;\n", + " pan_bounds.y0 -= 5;\n", + " pan_bounds.y1 += 5;\n", + " root.data(\"pan_bounds\", pan_bounds);\n", + "\n", + " root.data(\"zoompan-ready\", true)\n", + "};\n", + "\n", + "\n", + "// drag actions, i.e. zooming and panning\n", + "var pan_action = {\n", + " start: function(root, x, y, event) {\n", + " root.data(\"dx\", 0);\n", + " root.data(\"dy\", 0);\n", + " root.data(\"tx0\", root.data(\"tx\"));\n", + " root.data(\"ty0\", root.data(\"ty\"));\n", + " },\n", + " update: function(root, dx, dy, x, y, event) {\n", + " var px_per_mm = root.data(\"px_per_mm\");\n", + " dx /= px_per_mm;\n", + " dy /= px_per_mm;\n", + "\n", + " var tx0 = root.data(\"tx\"),\n", + " ty0 = root.data(\"ty\");\n", + "\n", + " var dx0 = root.data(\"dx\"),\n", + " dy0 = root.data(\"dy\");\n", + "\n", + " root.data(\"dx\", dx);\n", + " root.data(\"dy\", dy);\n", + "\n", + " dx = dx - dx0;\n", + " dy = dy - dy0;\n", + "\n", + " var tx = tx0 + dx,\n", + " ty = ty0 + dy;\n", + "\n", + " set_plot_pan_zoom(root, tx, ty, root.data(\"xscale\"), root.data(\"yscale\"));\n", + " },\n", + " end: function(root, event) {\n", + "\n", + " },\n", + " cancel: function(root) {\n", + " set_plot_pan_zoom(root, root.data(\"tx0\"), root.data(\"ty0\"),\n", + " root.data(\"xscale\"), root.data(\"yscale\"));\n", + " }\n", + "};\n", + "\n", + "var zoom_box;\n", + "var zoom_action = {\n", + " start: function(root, _x, _y, event) {\n", + " var bounds = root.plotbounds();\n", + " // _x and _y are co-ordinates relative to page, which caused problems\n", + " // unless the SVG is precisely at the top-left of the page\n", + " var viewbounds = root.viewportplotbounds();\n", + " var x = event.clientX - viewbounds.x0;\n", + " var y = event.clientY - viewbounds.y0;\n", + "\n", + " var width = bounds.x1 - bounds.x0,\n", + " height = bounds.y1 - bounds.y0;\n", + " var xscalable = root.hasClass(\"xscalable\"),\n", + " yscalable = root.hasClass(\"yscalable\");\n", + " var px_per_mm = root.data(\"px_per_mm\");\n", + " x = xscalable ? x / px_per_mm : bounds.x0;\n", + " y = yscalable ? y / px_per_mm : bounds.y0;\n", + " var w = xscalable ? 0 : width;\n", + " var h = yscalable ? 0 : height;\n", + " zoom_box = root.rect(x, y, w, h).attr({\n", + " \"fill\": \"#000\",\n", + " \"fill-opacity\": 0.25\n", + " });\n", + " },\n", + " update: function(root, dx, dy, _x, _y, event) {\n", + " var xscalable = root.hasClass(\"xscalable\"),\n", + " yscalable = root.hasClass(\"yscalable\");\n", + " var px_per_mm = root.data(\"px_per_mm\");\n", + " var bounds = root.plotbounds();\n", + " var viewbounds = root.viewportplotbounds();\n", + " var x = event.clientX - viewbounds.x0;\n", + " var y = event.clientY - viewbounds.y0;\n", + " if (yscalable) {\n", + " y /= px_per_mm;\n", + " y = Math.max(bounds.y0, y);\n", + " y = Math.min(bounds.y1, y);\n", + " } else {\n", + " y = bounds.y1;\n", + " }\n", + " if (xscalable) {\n", + " x /= px_per_mm;\n", + " x = Math.max(bounds.x0, x);\n", + " x = Math.min(bounds.x1, x);\n", + " } else {\n", + " x = bounds.x1;\n", + " }\n", + "\n", + " dx = x - zoom_box.attr(\"x\");\n", + " dy = y - zoom_box.attr(\"y\");\n", + " var xoffset = 0,\n", + " yoffset = 0;\n", + " if (dx < 0) {\n", + " xoffset = dx;\n", + " dx = -1 * dx;\n", + " }\n", + " if (dy < 0) {\n", + " yoffset = dy;\n", + " dy = -1 * dy;\n", + " }\n", + " if (isNaN(dy)) {\n", + " dy = 0.0;\n", + " }\n", + " if (isNaN(dx)) {\n", + " dx = 0.0;\n", + " }\n", + " zoom_box.transform(\"T\" + xoffset + \",\" + yoffset);\n", + " zoom_box.attr(\"width\", dx);\n", + " zoom_box.attr(\"height\", dy);\n", + " },\n", + " end: function(root, event) {\n", + " var xscalable = root.hasClass(\"xscalable\"),\n", + " yscalable = root.hasClass(\"yscalable\");\n", + " var zoom_bounds = zoom_box.getBBox();\n", + " if (zoom_bounds.width * zoom_bounds.height <= 0) {\n", + " return;\n", + " }\n", + " var plot_bounds = root.plotbounds();\n", + " var xzoom_factor = 1.0,\n", + " yzoom_factor = 1.0;\n", + " if (xscalable) {\n", + " xzoom_factor = (plot_bounds.x1 - plot_bounds.x0) / zoom_bounds.width;\n", + " }\n", + " if (yscalable) {\n", + " yzoom_factor = (plot_bounds.y1 - plot_bounds.y0) / zoom_bounds.height;\n", + " }\n", + " var tx = (root.data(\"tx\") - zoom_bounds.x) * xzoom_factor + plot_bounds.x0,\n", + " ty = (root.data(\"ty\") - zoom_bounds.y) * yzoom_factor + plot_bounds.y0;\n", + " set_plot_pan_zoom(root, tx, ty,\n", + " root.data(\"xscale\") * xzoom_factor, root.data(\"yscale\") * yzoom_factor);\n", + " zoom_box.remove();\n", + " },\n", + " cancel: function(root) {\n", + " zoom_box.remove();\n", + " }\n", + "};\n", + "\n", + "\n", + "Gadfly.guide_background_drag_onstart = function(x, y, event) {\n", + " var root = this.plotroot();\n", + " var scalable = root.hasClass(\"xscalable\") || root.hasClass(\"yscalable\");\n", + " var zoomable = !event.altKey && !event.ctrlKey && event.shiftKey && scalable;\n", + " var panable = !event.altKey && !event.ctrlKey && !event.shiftKey && scalable;\n", + " var drag_action = zoomable ? zoom_action :\n", + " panable ? pan_action :\n", + " undefined;\n", + " root.data(\"drag_action\", drag_action);\n", + " if (drag_action) {\n", + " var cancel_drag_action = function(event) {\n", + " if (event.which == 27) { // esc key\n", + " drag_action.cancel(root);\n", + " root.data(\"drag_action\", undefined);\n", + " }\n", + " };\n", + " window.addEventListener(\"keyup\", cancel_drag_action);\n", + " root.data(\"cancel_drag_action\", cancel_drag_action);\n", + " drag_action.start(root, x, y, event);\n", + " }\n", + "};\n", + "\n", + "\n", + "Gadfly.guide_background_drag_onmove = function(dx, dy, x, y, event) {\n", + " var root = this.plotroot();\n", + " var drag_action = root.data(\"drag_action\");\n", + " if (drag_action) {\n", + " drag_action.update(root, dx, dy, x, y, event);\n", + " }\n", + "};\n", + "\n", + "\n", + "Gadfly.guide_background_drag_onend = function(event) {\n", + " var root = this.plotroot();\n", + " window.removeEventListener(\"keyup\", root.data(\"cancel_drag_action\"));\n", + " root.data(\"cancel_drag_action\", undefined);\n", + " var drag_action = root.data(\"drag_action\");\n", + " if (drag_action) {\n", + " drag_action.end(root, event);\n", + " }\n", + " root.data(\"drag_action\", undefined);\n", + "};\n", + "\n", + "\n", + "Gadfly.guide_background_scroll = function(event) {\n", + " if (event.shiftKey) {\n", + " // event.deltaY is either the number of pixels, lines, or pages scrolled past.\n", + " var actual_delta;\n", + " switch (event.deltaMode) {\n", + " case 0: // Chromium-based\n", + " actual_delta = -event.deltaY / 1000.0;\n", + " break;\n", + " case 1: // Firefox\n", + " actual_delta = -event.deltaY / 50.0;\n", + " break;\n", + " default:\n", + " actual_delta = -event.deltaY;\n", + " }\n", + " // Assumes 20 pixels/line to get reasonably consistent cross-browser behaviour.\n", + " increase_zoom_by_position(this.plotroot(), actual_delta);\n", + " event.preventDefault();\n", + " }\n", + "};\n", + "\n", + "// Map slider position x to scale y using the function y = a*exp(b*x)+c.\n", + "// The constants a, b, and c are solved using the constraint that the function\n", + "// should go through the points (0; min_scale), (0.5; 1), and (1; max_scale).\n", + "var scale_from_slider_position = function(position, min_scale, max_scale) {\n", + " if (min_scale==max_scale) { return 1; }\n", + " var a = (1 - 2 * min_scale + min_scale * min_scale) / (min_scale + max_scale - 2),\n", + " b = 2 * Math.log((max_scale - 1) / (1 - min_scale)),\n", + " c = (min_scale * max_scale - 1) / (min_scale + max_scale - 2);\n", + " return a * Math.exp(b * position) + c;\n", + "}\n", + "\n", + "// inverse of scale_from_slider_position\n", + "var slider_position_from_scale = function(scale, min_scale, max_scale) {\n", + " if (min_scale==max_scale) { return min_scale; }\n", + " var a = (1 - 2 * min_scale + min_scale * min_scale) / (min_scale + max_scale - 2),\n", + " b = 2 * Math.log((max_scale - 1) / (1 - min_scale)),\n", + " c = (min_scale * max_scale - 1) / (min_scale + max_scale - 2);\n", + " return 1 / b * Math.log((scale - c) / a);\n", + "}\n", + "\n", + "var increase_zoom_by_position = function(root, delta_position, animate) {\n", + " var old_xscale = root.data(\"xscale\"),\n", + " old_yscale = root.data(\"yscale\"),\n", + " min_scale = root.data(\"min_scale\"),\n", + " max_scale = root.data(\"max_scale\");\n", + " var xposition = slider_position_from_scale(old_xscale, min_scale, max_scale),\n", + " yposition = slider_position_from_scale(old_yscale, min_scale, max_scale);\n", + " xposition += (root.hasClass(\"xscalable\") ? delta_position : 0.0);\n", + " yposition += (root.hasClass(\"yscalable\") ? delta_position : 0.0);\n", + " old_xscale = scale_from_slider_position(xposition, min_scale, max_scale);\n", + " old_yscale = scale_from_slider_position(yposition, min_scale, max_scale);\n", + " var new_xscale = Math.max(min_scale, Math.min(old_xscale, max_scale)),\n", + " new_yscale = Math.max(min_scale, Math.min(old_yscale, max_scale));\n", + " if (animate) {\n", + " Snap.animate(\n", + " [old_xscale, old_yscale],\n", + " [new_xscale, new_yscale],\n", + " function (new_scale) {\n", + " update_plot_scale(root, new_scale[0], new_scale[1]);\n", + " },\n", + " 200);\n", + " } else {\n", + " update_plot_scale(root, new_xscale, new_yscale);\n", + " }\n", + "}\n", + "\n", + "\n", + "var update_plot_scale = function(root, new_xscale, new_yscale) {\n", + " var trans = scale_centered_translation(root, new_xscale, new_yscale);\n", + " set_plot_pan_zoom(root, trans.x, trans.y, new_xscale, new_yscale);\n", + "};\n", + "\n", + "\n", + "var toggle_color_class = function(root, color_class, ison) {\n", + " var escaped_color_class = color_class.replace(/([^0-9a-zA-z])/g,\"\\\\$1\");\n", + " var guides = root.selectAll(\".guide.\" + escaped_color_class + \",.guide .\" + escaped_color_class);\n", + " var geoms = root.selectAll(\".geometry.\" + escaped_color_class + \",.geometry .\" + escaped_color_class);\n", + " if (ison) {\n", + " guides.animate({opacity: 0.5}, 250);\n", + " geoms.animate({opacity: 0.0}, 250);\n", + " } else {\n", + " guides.animate({opacity: 1.0}, 250);\n", + " geoms.animate({opacity: 1.0}, 250);\n", + " }\n", + "};\n", + "\n", + "\n", + "Gadfly.colorkey_swatch_click = function(event) {\n", + " var root = this.plotroot();\n", + " var color_class = this.data(\"color_class\");\n", + "\n", + " if (event.shiftKey) {\n", + " root.selectAll(\".colorkey g\")\n", + " .forEach(function (element) {\n", + " var other_color_class = element.data(\"color_class\");\n", + " if (typeof other_color_class !== 'undefined' && other_color_class != color_class) {\n", + " toggle_color_class(root, other_color_class,\n", + " element.attr(\"opacity\") == 1.0);\n", + " }\n", + " });\n", + " } else {\n", + " toggle_color_class(root, color_class, this.attr(\"opacity\") == 1.0);\n", + " }\n", + "};\n", + "\n", + "\n", + "return Gadfly;\n", + "\n", + "}));\n", + "\n", + "\n", + "//@ sourceURL=gadfly.js\n", + "\n", + "(function (glob, factory) {\n", + " // AMD support\n", + " if (typeof require === \"function\" && typeof define === \"function\" && define.amd) {\n", + " require([\"Snap.svg\", \"Gadfly\"], function (Snap, Gadfly) {\n", + " factory(Snap, Gadfly);\n", + " });\n", + " } else {\n", + " factory(glob.Snap, glob.Gadfly);\n", + " }\n", + "})(window, function (Snap, Gadfly) {\n", + " var fig = Snap(\"#img-c950aed8\");\n", + "fig.select(\"#img-c950aed8-5\")\n", + " .init_gadfly();\n", + "fig.select(\"#img-c950aed8-8\")\n", + " .plotroot().data(\"unfocused_ygrid_color\", \"#D0D0E0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-8\")\n", + " .plotroot().data(\"focused_ygrid_color\", \"#A0A0A0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-114\")\n", + " .plotroot().data(\"unfocused_xgrid_color\", \"#D0D0E0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-114\")\n", + " .plotroot().data(\"focused_xgrid_color\", \"#A0A0A0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-253\")\n", + " .mouseenter(Gadfly.helpscreen_visible)\n", + ".mouseleave(Gadfly.helpscreen_hidden)\n", + ";\n", + "fig.select(\"#img-c950aed8-486\")\n", + " .init_gadfly();\n", + "fig.select(\"#img-c950aed8-489\")\n", + " .plotroot().data(\"unfocused_ygrid_color\", \"#D0D0E0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-489\")\n", + " .plotroot().data(\"focused_ygrid_color\", \"#A0A0A0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-642\")\n", + " .plotroot().data(\"unfocused_xgrid_color\", \"#D0D0E0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-642\")\n", + " .plotroot().data(\"focused_xgrid_color\", \"#A0A0A0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-781\")\n", + " .mouseenter(Gadfly.helpscreen_visible)\n", + ".mouseleave(Gadfly.helpscreen_hidden)\n", + ";\n", + "fig.select(\"#img-c950aed8-1049\")\n", + " .init_gadfly();\n", + "fig.select(\"#img-c950aed8-1052\")\n", + " .plotroot().data(\"unfocused_ygrid_color\", \"#D0D0E0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-1052\")\n", + " .plotroot().data(\"focused_ygrid_color\", \"#A0A0A0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-1158\")\n", + " .plotroot().data(\"unfocused_xgrid_color\", \"#D0D0E0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-1158\")\n", + " .plotroot().data(\"focused_xgrid_color\", \"#A0A0A0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-1285\")\n", + " .mouseenter(Gadfly.helpscreen_visible)\n", + ".mouseleave(Gadfly.helpscreen_hidden)\n", + ";\n", + "fig.select(\"#img-c950aed8-1518\")\n", + " .init_gadfly();\n", + "fig.select(\"#img-c950aed8-1521\")\n", + " .plotroot().data(\"unfocused_ygrid_color\", \"#D0D0E0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-1521\")\n", + " .plotroot().data(\"focused_ygrid_color\", \"#A0A0A0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-1636\")\n", + " .plotroot().data(\"unfocused_xgrid_color\", \"#D0D0E0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-1636\")\n", + " .plotroot().data(\"focused_xgrid_color\", \"#A0A0A0\")\n", + ";\n", + "fig.select(\"#img-c950aed8-1775\")\n", + " .mouseenter(Gadfly.helpscreen_visible)\n", + ".mouseleave(Gadfly.helpscreen_hidden)\n", + ";\n", + " });\n", + "]]> </script>\n", + "</svg>\n" + ], + "text/plain": [ + "Compose.Context(Measures.BoundingBox{Tuple{Measures.Length{:cx, Int64}, Measures.Length{:cy, Int64}}, Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}}((0cx, 0cy), (1.0w, 1.0h)), nothing, nothing, nothing, nothing, List([Compose.Context(Measures.BoundingBox{Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}, Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}}((0.5w, 0.0h), (0.5w, 1.0h)), 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Measures.Measure}[(11.5cx, 0.0h), (11.5cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(12.0cx, 0.0h), (12.0cx, 1.0h)])], Symbol(\"\"))]), List([Compose.Property{Compose.JSCallPrimitive}(Compose.JSCallPrimitive[Compose.JSCallPrimitive(\"plotroot().data(\\\"unfocused_xgrid_color\\\", \\\"#D0D0E0\\\")\\n\", Measures.Measure[])]), Compose.Property{Compose.JSCallPrimitive}(Compose.JSCallPrimitive[Compose.JSCallPrimitive(\"plotroot().data(\\\"focused_xgrid_color\\\", \\\"#A0A0A0\\\")\\n\", Measures.Measure[])]), Compose.Property{Compose.SVGAttributePrimitive}(Compose.SVGAttributePrimitive[Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", 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Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false)])]), 0, false, true, false, false, nothing, nothing, 0.0, Symbol(\"\")), Compose.Context(Measures.BoundingBox{Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}, Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}}((0.0w, 0.0h), (1.0w, 1.0h)), nothing, nothing, nothing, nothing, List([]), List([Compose.Form{Compose.LinePrimitive}(Compose.LinePrimitive[Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(-4.0cx, 0.0h), (-4.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(-2.0cx, 0.0h), (-2.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(0.0cx, 0.0h), (0.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(2.0cx, 0.0h), (2.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(4.0cx, 0.0h), (4.0cx, 1.0h)])], Symbol(\"\"))]), List([Compose.Property{Compose.SVGClassPrimitive}(Compose.SVGClassPrimitive[Compose.SVGClassPrimitive(\"guide xgridlines yfixed\")]), Compose.Property{Compose.StrokeDashPrimitive}(Compose.StrokeDashPrimitive[Compose.StrokeDashPrimitive(Measures.Measure[0.5mm, 0.5mm])]), Compose.Property{Compose.LineWidthPrimitive}(Compose.LineWidthPrimitive[Compose.LineWidthPrimitive(0.2mm)]), Compose.Property{Compose.StrokePrimitive}(Compose.StrokePrimitive[Compose.StrokePrimitive(RGBA{Float64}(0.8156862745098039,0.8156862745098039,0.8784313725490196,1.0))])]), 0, false, false, true, false, nothing, nothing, 0.0, Symbol(\"\"))]), List([]), List([]), 0, false, false, false, false, nothing, nothing, 0.0, 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21.186666666666667, 7.346666666666667, 0.0, Symbol(\"\")), Compose.Context(Measures.BoundingBox{Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}, Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}}((0.0w, 0.0h), (1.0w, 1.0h)), Compose.UnitBox{Float64, Float64, Float64, Float64}(-4.0, 1.0, 8.0, -1.0, 2.0mm, 2.0mm, 0.0mm, 0.0mm), nothing, nothing, nothing, List([Compose.AdhocContainerPromise(Gadfly.Guide.var\"#36#45\"{Theme, Measures.AbsoluteLength}(Theme(LCHab{Float32}(70.0f0,60.0f0,240.0f0), 1.7638888888888888mm, 0.45mm, 1.8mm, Gadfly.Scale.default_discrete_sizes, Gadfly.Scale.default_continuous_sizes, Gadfly.Scale.default_discrete_colors, Function[Compose.circle, Gadfly.Shape.square, Gadfly.Shape.diamond, Gadfly.Shape.cross, Gadfly.Shape.xcross, Gadfly.Shape.utriangle, Gadfly.Shape.dtriangle, Gadfly.Shape.star1, Gadfly.Shape.star2, Gadfly.Shape.hexagon, Gadfly.Shape.octagon, Gadfly.Shape.hline, Gadfly.Shape.vline, Gadfly.Shape.ltriangle, Gadfly.Shape.rtriangle], 0.35277777777777775mm, [:solid, :dash, :dot, :dashdot, :dashdotdot, :ldash, :ldashdash, :ldashdot, :ldashdashdot], [1.0, 0.9, 0.8, 0.7, 0.6, 0.5, 0.4, 0.3, 0.2, 0.1, 0.0], nothing, nothing, 0.3mm, 0.0, nothing, Measures.AbsoluteLength[5.0mm], RGB{N0f8}(0.816,0.816,0.878), Measures.AbsoluteLength[0.5mm, 0.5mm], RGB{N0f8}(0.627,0.627,0.627), 0.2mm, 0, \"'PT Sans Caption','Helvetica Neue','Helvetica',sans-serif\", 5.644444444444444mm, RGB{N0f8}(0.424,0.376,0.42), \"'PT Sans','Helvetica Neue','Helvetica',sans-serif\", 6.35mm, RGB{N0f8}(0.337,0.29,0.333), \"'PT Sans Caption','Helvetica Neue','Helvetica',sans-serif\", 2.822222222222222mm, RGB{N0f8}(0.298,0.251,0.294), \"'PT Sans','Helvetica Neue','Helvetica',sans-serif\", 3.880555555555555mm, RGB{N0f8}(0.212,0.165,0.208), \"'PT Sans','Helvetica Neue','Helvetica',sans-serif\", 2.822222222222222mm, RGB{N0f8}(0.298,0.251,0.294), 40, -0.05mm, 1.0mm, 3.0mm, Gadfly.default_stroke_color, 0.3mm, Gadfly.default_discrete_highlight_color, Gadfly.default_continuous_highlight_color, Gadfly.default_lowlight_color, Gadfly.default_middle_color, 0.6mm, :left, :square, nothing, nothing, nothing, :right, nothing, 2.0mm, 1000, 10.0, 0.5, 0.2, 1.0mm, 4, Gadfly.Scale.DiscreteColorScale(Gadfly.Scale.default_discrete_colors, nothing, nothing, true), Gadfly.Scale.ContinuousColorScale(Gadfly.Scale.var\"#73#77\"{Int64, Int64, Int64, Int64, Float64, Int64}(100, 40, 260, 10, 1.5, 70), Gadfly.Scale.ContinuousScaleTransform(identity, identity, Gadfly.Scale.identity_formatter), nothing, nothing)), 1.0mm, Core.Box([1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0 … 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0, 10.0]), Core.Box(Bool[0, 0, 0, 0, 0, 1, 1, 1, 1, 1 … 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]), Core.Box([-14.0, -12.0, -10.0, -8.0, -6.0, -4.0, -2.0, 0.0, 2.0, 4.0 … 7.5, 8.0, 8.5, 9.0, 9.5, 10.0, 10.5, 11.0, 11.5, 12.0]), Core.Box(AbstractString[\"-14\", \"-12\", \"-10\", \"-8\", \"-6\", \"-4\", 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Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(12.0cx, 0.0h), (12.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(12.5cx, 0.0h), (12.5cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(13.0cx, 0.0h), (13.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(13.5cx, 0.0h), (13.5cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(14.0cx, 0.0h), (14.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(14.5cx, 0.0h), (14.5cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(15.0cx, 0.0h), (15.0cx, 1.0h)])], 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Compose.SVGAttributePrimitive(\"gadfly:scale\", \"5.0\") … Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\")]), Compose.Property{Compose.SVGClassPrimitive}(Compose.SVGClassPrimitive[Compose.SVGClassPrimitive(\"guide xgridlines yfixed\")]), Compose.Property{Compose.StrokeDashPrimitive}(Compose.StrokeDashPrimitive[Compose.StrokeDashPrimitive(Measures.Measure[0.5mm, 0.5mm])]), 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Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\") … Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\")]), Compose.Property{Compose.SVGClassPrimitive}(Compose.SVGClassPrimitive[Compose.SVGClassPrimitive(\"guide ygridlines xfixed\")]), Compose.Property{Compose.StrokeDashPrimitive}(Compose.StrokeDashPrimitive[Compose.StrokeDashPrimitive(Measures.Measure[0.5mm, 0.5mm])]), Compose.Property{Compose.LineWidthPrimitive}(Compose.LineWidthPrimitive[Compose.LineWidthPrimitive(0.2mm)]), Compose.Property{Compose.StrokePrimitive}(Compose.StrokePrimitive[Compose.StrokePrimitive(RGBA{Float64}(0.8156862745098039,0.8156862745098039,0.8784313725490196,1.0))]), Compose.Property{Compose.VisiblePrimitive}(Compose.VisiblePrimitive[Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(true), Compose.VisiblePrimitive(true), Compose.VisiblePrimitive(true), Compose.VisiblePrimitive(true) … Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false)])]), 0, false, true, false, false, nothing, nothing, 0.0, Symbol(\"\")), Compose.Context(Measures.BoundingBox{Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}, Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}}((0.0w, 0.0h), (1.0w, 1.0h)), nothing, nothing, nothing, nothing, List([]), List([Compose.Form{Compose.LinePrimitive}(Compose.LinePrimitive[Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(0.0w, 0.0cy), (1.0w, 0.0cy)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(0.0w, 0.2cy), (1.0w, 0.2cy)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(0.0w, 0.4cy), (1.0w, 0.4cy)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(0.0w, 0.6000000000000001cy), (1.0w, 0.6000000000000001cy)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(0.0w, 0.8cy), (1.0w, 0.8cy)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(0.0w, 1.0cy), (1.0w, 1.0cy)])], Symbol(\"\"))]), List([Compose.Property{Compose.SVGClassPrimitive}(Compose.SVGClassPrimitive[Compose.SVGClassPrimitive(\"guide ygridlines xfixed\")]), Compose.Property{Compose.StrokeDashPrimitive}(Compose.StrokeDashPrimitive[Compose.StrokeDashPrimitive(Measures.Measure[0.5mm, 0.5mm])]), Compose.Property{Compose.LineWidthPrimitive}(Compose.LineWidthPrimitive[Compose.LineWidthPrimitive(0.2mm)]), Compose.Property{Compose.StrokePrimitive}(Compose.StrokePrimitive[Compose.StrokePrimitive(RGBA{Float64}(0.8156862745098039,0.8156862745098039,0.8784313725490196,1.0))])]), 0, false, false, true, false, nothing, nothing, 0.0, Symbol(\"\"))]), List([]), List([]), 0, false, false, false, false, nothing, nothing, 0.0, Symbol(\"\")), Compose.Context(Measures.BoundingBox{Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}, Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}}((0.0w, 0.0h), (1.0w, 1.0h)), nothing, nothing, nothing, nothing, List([Compose.Context(Measures.BoundingBox{Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}, Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}}((0.0w, 0.0h), (1.0w, 1.0h)), nothing, nothing, nothing, nothing, List([]), List([Compose.Form{Compose.LinePrimitive}(Compose.LinePrimitive[Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(-14.0cx, 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(0.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(2.0cx, 0.0h), (2.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(4.0cx, 0.0h), (4.0cx, 1.0h)]) … Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(7.5cx, 0.0h), (7.5cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(8.0cx, 0.0h), (8.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(8.5cx, 0.0h), (8.5cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(9.0cx, 0.0h), (9.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(9.5cx, 0.0h), (9.5cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(10.0cx, 0.0h), (10.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(10.5cx, 0.0h), (10.5cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(11.0cx, 0.0h), (11.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(11.5cx, 0.0h), (11.5cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(12.0cx, 0.0h), (12.0cx, 1.0h)])], Symbol(\"\"))]), List([Compose.Property{Compose.JSCallPrimitive}(Compose.JSCallPrimitive[Compose.JSCallPrimitive(\"plotroot().data(\\\"unfocused_xgrid_color\\\", \\\"#D0D0E0\\\")\\n\", Measures.Measure[])]), Compose.Property{Compose.JSCallPrimitive}(Compose.JSCallPrimitive[Compose.JSCallPrimitive(\"plotroot().data(\\\"focused_xgrid_color\\\", \\\"#A0A0A0\\\")\\n\", Measures.Measure[])]), Compose.Property{Compose.SVGAttributePrimitive}(Compose.SVGAttributePrimitive[Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"1.0\") … Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\"), Compose.SVGAttributePrimitive(\"gadfly:scale\", \"10.0\")]), Compose.Property{Compose.SVGClassPrimitive}(Compose.SVGClassPrimitive[Compose.SVGClassPrimitive(\"guide xgridlines yfixed\")]), Compose.Property{Compose.StrokeDashPrimitive}(Compose.StrokeDashPrimitive[Compose.StrokeDashPrimitive(Measures.Measure[0.5mm, 0.5mm])]), Compose.Property{Compose.LineWidthPrimitive}(Compose.LineWidthPrimitive[Compose.LineWidthPrimitive(0.2mm)]), Compose.Property{Compose.StrokePrimitive}(Compose.StrokePrimitive[Compose.StrokePrimitive(RGBA{Float64}(0.8156862745098039,0.8156862745098039,0.8784313725490196,1.0))]), Compose.Property{Compose.VisiblePrimitive}(Compose.VisiblePrimitive[Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(true), Compose.VisiblePrimitive(true), Compose.VisiblePrimitive(true), Compose.VisiblePrimitive(true), Compose.VisiblePrimitive(true) … Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false), Compose.VisiblePrimitive(false)])]), 0, false, true, false, false, nothing, nothing, 0.0, Symbol(\"\")), Compose.Context(Measures.BoundingBox{Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}, Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}}((0.0w, 0.0h), (1.0w, 1.0h)), nothing, nothing, nothing, nothing, List([]), List([Compose.Form{Compose.LinePrimitive}(Compose.LinePrimitive[Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(-4.0cx, 0.0h), (-4.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(-2.0cx, 0.0h), (-2.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(0.0cx, 0.0h), (0.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(2.0cx, 0.0h), (2.0cx, 1.0h)]), Compose.LinePrimitive{Tuple{Measures.Measure, Measures.Measure}}(Tuple{Measures.Measure, Measures.Measure}[(4.0cx, 0.0h), (4.0cx, 1.0h)])], Symbol(\"\"))]), List([Compose.Property{Compose.SVGClassPrimitive}(Compose.SVGClassPrimitive[Compose.SVGClassPrimitive(\"guide xgridlines yfixed\")]), Compose.Property{Compose.StrokeDashPrimitive}(Compose.StrokeDashPrimitive[Compose.StrokeDashPrimitive(Measures.Measure[0.5mm, 0.5mm])]), Compose.Property{Compose.LineWidthPrimitive}(Compose.LineWidthPrimitive[Compose.LineWidthPrimitive(0.2mm)]), Compose.Property{Compose.StrokePrimitive}(Compose.StrokePrimitive[Compose.StrokePrimitive(RGBA{Float64}(0.8156862745098039,0.8156862745098039,0.8784313725490196,1.0))])]), 0, false, false, true, false, nothing, nothing, 0.0, Symbol(\"\"))]), List([]), List([]), 0, false, false, false, false, nothing, nothing, 0.0, Symbol(\"\")), Compose.Context(Measures.BoundingBox{Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}, Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}}((0.0w, 0.0h), (1.0w, 1.0h)), nothing, nothing, nothing, nothing, List([]), List([Compose.Form{Compose.RectanglePrimitive{Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}, Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}}(Compose.RectanglePrimitive{Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}, Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}[Compose.RectanglePrimitive{Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}, Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}((0.0w, 0.0h), 1.0w, 1.0h)], Symbol(\"\"))]), List([Compose.Property{Compose.SVGAttributePrimitive}(Compose.SVGAttributePrimitive[Compose.SVGAttributePrimitive(\"pointer-events\", \"visible\")]), Compose.Property{Compose.LineWidthPrimitive}(Compose.LineWidthPrimitive[Compose.LineWidthPrimitive(0.3mm)]), Compose.Property{Compose.FillPrimitive}(Compose.FillPrimitive[Compose.FillPrimitive(RGBA{Float64}(0.0,0.0,0.0,0.0))]), Compose.Property{Compose.StrokePrimitive}(Compose.StrokePrimitive[Compose.StrokePrimitive(RGBA{Float64}(0.0,0.0,0.0,0.0))]), Compose.Property{Compose.SVGClassPrimitive}(Compose.SVGClassPrimitive[Compose.SVGClassPrimitive(\"guide background\")])]), -1, false, false, false, false, nothing, nothing, 0.0, Symbol(\"\"))]), List([]), List([]), -1, false, false, false, false, nothing, nothing, 0.0, Symbol(\"\"))]), List([]), List([Compose.Property{Compose.JSCallPrimitive}(Compose.JSCallPrimitive[Compose.JSCallPrimitive(\"init_gadfly()\", Measures.Measure[])])]), 0, true, false, false, false, nothing, nothing, 0.0, Symbol(\"\"))]; [] [] [Compose.Context(Measures.BoundingBox{Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}, Tuple{Measures.Length{:w, Float64}, Measures.Length{:h, Float64}}}((0.0w, 0.0h), (1.0w, 1.0h)), Compose.UnitBox{Float64, Float64, Float64, Float64}(-4.0, 1.0, 8.0, -1.0, 2.0mm, 2.0mm, 0.0mm, 0.0mm), nothing, nothing, nothing, List([Compose.AdhocContainerPromise(Gadfly.Guide.var\"#35#44\"{Theme, Measures.AbsoluteLength}(Theme(LCHab{Float32}(70.0f0,60.0f0,240.0f0), 1.7638888888888888mm, 0.45mm, 1.8mm, Gadfly.Scale.default_discrete_sizes, Gadfly.Scale.default_continuous_sizes, Gadfly.Scale.default_discrete_colors, Function[Compose.circle, Gadfly.Shape.square, Gadfly.Shape.diamond, Gadfly.Shape.cross, Gadfly.Shape.xcross, Gadfly.Shape.utriangle, Gadfly.Shape.dtriangle, Gadfly.Shape.star1, Gadfly.Shape.star2, Gadfly.Shape.hexagon, Gadfly.Shape.octagon, Gadfly.Shape.hline, Gadfly.Shape.vline, Gadfly.Shape.ltriangle, Gadfly.Shape.rtriangle], 0.35277777777777775mm, [:solid, :dash, :dot, :dashdot, :dashdotdot, :ldash, :ldashdash, :ldashdot, :ldashdashdot], [1.0, 0.9, 0.8, 0.7, 0.6, 0.5, 0.4, 0.3, 0.2, 0.1, 0.0], nothing, nothing, 0.3mm, 0.0, nothing, Measures.AbsoluteLength[5.0mm], RGB{N0f8}(0.816,0.816,0.878), Measures.AbsoluteLength[0.5mm, 0.5mm], RGB{N0f8}(0.627,0.627,0.627), 0.2mm, 0, \"'PT Sans 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[], + "outputs": [ + { + "data": { + "text/plain": [ + "(prediction = [0.7507924606530002, 0.21613220135869127], lower = [0.6979513658053658, 0.17521172612604483], upper = [0.7970770607803495, 0.26355574801365456])" + ] + }, + "execution_count": 10, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "predict(occupancy(fit), pr_df, interval=true) " ] @@ -504,9 +14302,37 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 11, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "\u001b[32mBootstrap (50 sims) 100%|███████████████████████████████| Time: 0:00:10\u001b[39m\n" + ] + }, + { + "data": { + "text/plain": [] + }, + "execution_count": 11, + "metadata": {}, + "output_type": "execute_result" + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\n", + "MacKenzie-Bailey Goodness-of-fit\n", + "\n", + " χ2 = 19.0489\n", + " P-value = 0.9200\n", + " Est. c-hat = 0.6895" + ] + } + ], "source": [ "gof(fit)" ] @@ -522,9 +14348,17 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 12, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "\u001b[32mFitting 16 models 100%|█████████████████████████████████| Time: 0:00:12\u001b[39m\n" + ] + } + ], "source": [ "fit_all = occu(allsub(ψ_formula), allsub(p_formula), umd);" ] @@ -538,9 +14372,44 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 13, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [] + }, + "execution_count": 13, + "metadata": {}, + "output_type": "execute_result" + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "┌─────┬──────────────────────────────┬─────────┬────────┬────────┐\n", + "│\u001b[1m No. \u001b[0m│\u001b[1m Model \u001b[0m│\u001b[1m AIC \u001b[0m│\u001b[1m Δ AIC \u001b[0m│\u001b[1m Weight \u001b[0m│\n", + "├─────┼──────────────────────────────┼─────────┼────────┼────────┤\n", + "│ 12 │ ψ(elev+forest)p(wind) │ 4069.69 │ 0.00 │ 0.69 │\n", + "│ 16 │ ψ(elev+forest)p(precip+wind) │ 4071.25 │ 1.56 │ 0.31 │\n", + "│ 11 │ ψ(forest)p(wind) │ 4091.22 │ 21.53 │ 0.00 │\n", + "│ 15 │ ψ(forest)p(precip+wind) │ 4092.83 │ 23.14 │ 0.00 │\n", + "│ 10 │ ψ(elev)p(wind) │ 4304.39 │ 234.70 │ 0.00 │\n", + "│ 14 │ ψ(elev)p(precip+wind) │ 4305.95 │ 236.26 │ 0.00 │\n", + "│ 9 │ ψ(.)p(wind) │ 4315.01 │ 245.32 │ 0.00 │\n", + "│ 13 │ ψ(.)p(precip+wind) │ 4316.57 │ 246.88 │ 0.00 │\n", + "│ 4 │ ψ(elev+forest)p(.) │ 4387.35 │ 317.66 │ 0.00 │\n", + "│ 8 │ ψ(elev+forest)p(precip) │ 4389.34 │ 319.65 │ 0.00 │\n", + "│ 3 │ ψ(forest)p(.) │ 4409.20 │ 339.51 │ 0.00 │\n", + "│ 7 │ ψ(forest)p(precip) │ 4411.19 │ 341.50 │ 0.00 │\n", + "│ 2 │ ψ(elev)p(.) │ 4623.42 │ 553.73 │ 0.00 │\n", + "│ 6 │ ψ(elev)p(precip) │ 4625.42 │ 555.73 │ 0.00 │\n", + "│ 1 │ ψ(.)p(.) │ 4634.37 │ 564.68 │ 0.00 │\n", + "│ 5 │ ψ(.)p(precip) │ 4636.37 │ 566.68 │ 0.00 │\n", + "└─────┴──────────────────────────────┴─────────┴────────┴────────┘\n" + ] + } + ], "source": [ "fit_all" ] @@ -560,5 +14429,5 @@ } }, "nbformat": 4, - "nbformat_minor": 2 + "nbformat_minor": 4 } diff --git a/src/design.jl b/src/design.jl index e7a820c..3993e5f 100644 --- a/src/design.jl +++ b/src/design.jl @@ -11,8 +11,9 @@ end #Check formulas for validity function check_formula(formula::FormulaTerm, data::DataFrame) - vars = String.(varnames(formula).rhs) + vars = varnames(formula).rhs if isnothing(vars) return nothing end + vars = String.(vars) covs = names(data) for x in vars if x ∉ covs error(string(x," not found in data")) end @@ -9,14 +9,14 @@ end "Optimize a likelihood function loglik with np parameters" function optimize_loglik(loglik, np) - func = TwiceDifferentiable(vars -> loglik(vars), zeros(np); + func = TwiceDifferentiable(vars -> loglik(vars), zeros(np); autodiff=:forward) opt = optimize(func, zeros(np), LBFGS()) param = Optim.minimizer(opt) hes = NLSolversBase.hessian!(func, param) vcov = inv(hes) - loglik = -Optim.minimum(opt) + loglik = -Optim.minimum(opt) UnmarkedOpt(param, vcov, loglik) end @@ -77,7 +77,7 @@ function short_name(fit::Unmarked.UnmarkedSubmodel) end function short_name(fit::Unmarked.UnmarkedModel) - join(map(x -> short_name(x), fit.submodels)) + join(map(x -> short_name(x), fit.submodels)) end #Re-create design matrices from fitted models------------------------- @@ -100,7 +100,7 @@ function Base.show(io::IO, um::UnmarkedSubmodel) end function Base.show(io::IO, fit::UnmarkedModel) - + println() for i = 1:length(fit.submodels) println(string(fit.submodels[i].name, ": ", fit.submodels[i].formula)) @@ -120,14 +120,14 @@ function Base.show(io::IO, um::UnmarkedModels) tab = [r map(x->short_name(x),um.models)[r] a da wt] pretty_table(tab, ["No.", "Model", "AIC", "Δ AIC", "Weight"], alignment=[:l,:l,:r,:r,:r], - formatter=ft_printf("%.2f",[3,4,5])) + formatters=ft_printf("%.2f",[3,4,5])) end #Misc. methods reguired for RegressionModel interface----------------- #Coeftable function coeftable(um::UnmarkedSubmodel; level::Real=0.95) - + c = coef(um) se = stderror(um) z = abs.(c ./ se) @@ -135,7 +135,7 @@ function coeftable(um::UnmarkedSubmodel; level::Real=0.95) ci = se*quantile(Normal(), (1-level)/2) levstr = level*100 levstr = isinteger(levstr) ? string(Integer(levstr)) : string(levstr) - CoefTable(map(x->round.(x,digits=4), [c, se, z, pval, c+ci, c-ci]), + CoefTable(map(x->round.(x,digits=4), [c, se, z, pval, c+ci, c-ci]), ["Estimate", "SE", "z", "Pr(>|z|)", "Low $levstr%","Up $levstr%"], coefnames(um), 4, 3) @@ -158,7 +158,7 @@ end function coefnames(x::UnmarkedSubmodel) return x.coefnames end - + #Variance-covariance matrix function vcov(x::UnmarkedModel) return x.opt.vcov diff --git a/test/runtests.jl b/test/runtests.jl index 180031d..838d21f 100644 --- a/test/runtests.jl +++ b/test/runtests.jl @@ -1,5 +1,5 @@ using Test, Unmarked -using Random, StatsModels, StatsFuns, StatsBase, DataFrames +using Random, StatsModels, StatsFuns, StatsBase, DataFrames, CategoricalArrays include("test_data.jl") include("test_design.jl") diff --git a/test/test_categorical.jl b/test/test_categorical.jl index 11e488b..7fcf3dc 100644 --- a/test/test_categorical.jl +++ b/test/test_categorical.jl @@ -1,14 +1,16 @@ @testset "Cat Covs" begin + using CategoricalArrays + #Test handling categorical data df = DataFrame(a=[1,2], b=categorical(["low","high"])) levels!(df.b, ["low", "high"]) - + @test isequal(Unmarked.n_levels(df.a), 0) @test isequal(Unmarked.n_levels(df.b), 2) @test isequal(Unmarked.rep_levels(df.a, 5), repeat([0], 5)) @test isequal(Unmarked.rep_levels(df.b, 3), ["low","high","low"]) - + df[!, :catvar] = categorical(["cat1", "cat1"]) levels!(df.catvar, ["cat1","cat2","cat3"]) dfn = Unmarked.add_levels(df) @@ -16,7 +18,7 @@ @test isequal(nrow(dfn), 3) @test isequal(dfn.catvar, levels(dfn.catvar)) @test isequal(names(dfn), names(df)) - + #Fit model with categorical ψ_formula = @formula(ψ~elev+forest); p_formula = @formula(p~precip+wind); @@ -29,7 +31,7 @@ levels!(umd.site_covs.catvar, ["low","med","high"]) fit = occu(ψ_formula, p_formula, umd); - + @test isequal(coefnames(fit)[4:5], ["catvar: med", "catvar: high"]) #Predict diff --git a/test/test_nmix.jl b/test/test_nmix.jl index c20fce1..36ebab8 100644 --- a/test/test_nmix.jl +++ b/test/test_nmix.jl @@ -1,9 +1,9 @@ @testset "Nmix GOF" begin - + #Test separating cohorts by NA pattern Random.seed!(123) umd1 = simulate(Nmix, @formula(ψ~elev+forest), @formula(p~wind+precip), - (10,3), [0,0,0,0,0,0]) + (50,3), [0,0,0,0,0,0]) fit1 = nmix(@formula(ψ~elev), @formula(p~wind), umd1) yna = Array{Union{Int,Missing}}(deepcopy(umd1.y)) @@ -12,29 +12,29 @@ yna[3,[1,3]] = fill(missing,2) umd2 = UmData(yna, umd1.site_covs, umd1.obs_covs) fit2 = nmix(@formula(ψ~elev), @formula(p~wind), umd2) - + #Test fitted ft = Unmarked.fitted(fit1) @test ft isa Array - @test length(ft) == 30 - @test round(sum(ft),digits=4) == 23.9460 - + @test length(ft) == 150 + @test round(sum(ft),digits=4) == 56.8432 + #Test residuals rs = Unmarked.residuals(fit1) @test rs isa Array - @test length(rs) == 30 - @test round(sum(rs), digits=4) == -0.054 + @test length(rs) == 150 + @test round(sum(rs), digits=4) == -0.1568 #Test chi-square calc - @test isequal(round(Unmarked.chisq(fit1),digits=4), 23.0500) + @test isequal(round(Unmarked.chisq(fit1),digits=4), 144.1886) #with missing values - @test isequal(round(Unmarked.chisq(fit2),digits=4), 19.3308) + @test isequal(round(Unmarked.chisq(fit2),digits=4), 138.6249) #Test parametric bootstrap Random.seed!(123) gf = gof(fit1) @test isequal(length(gf.tstar), 30) - @test isequal(mean(gf.t0 .< gf.tstar), 0.7000) + @test isequal(round(mean(gf.t0 .< gf.tstar), digits=4), 0.3667) gf2 = gof(fit2) - @test isequal(mean(gf2.t0 .< gf2.tstar), 0.6000) + @test isequal(mean(gf2.t0 .< gf2.tstar), 0.5000) end diff --git a/test/test_occu.jl b/test/test_occu.jl index 70f0419..18ad33f 100644 --- a/test/test_occu.jl +++ b/test/test_occu.jl @@ -1,11 +1,11 @@ @testset "Occu GOF" begin - + #Test separating cohorts by NA pattern Random.seed!(123) umd1 = simulate(Occu, @formula(ψ~elev+forest), @formula(p~wind+precip), - (10,3), [0,0,0,0,0,0]) + (50,3), [0,0,0,0,0,0]) fit1 = occu(@formula(ψ~elev), @formula(p~wind), umd1) - + gc = Unmarked.get_cohorts(fit1) @test isequal(length(gc), 1) @test isequal(gc[1].y, umd1.y) @@ -16,10 +16,10 @@ yna[3,[1,3]] = fill(missing,2) umd2 = UmData(yna, umd1.site_covs, umd1.obs_covs) fit2 = occu(@formula(ψ~elev), @formula(p~wind), umd2) - + gc = Unmarked.get_cohorts(fit2) @test isequal(length(gc), 3) - @test isequal(gc[1].y, umd2[4:10].y) + @test isequal(gc[1].y, umd2[4:50].y) @test isequal(gc[2].y, umd2[3].y) @test isequal(gc[3].y, umd2[2].y) @@ -28,33 +28,33 @@ pval = [0.2, 0.8, 0.3] eh1 = "0 1 1" ehp1 = Unmarked.get_prob_eh(Occu, eh1, pval, psi) - @test isequal(ehp1, 0.5*prod(pval .* [0,1,1] + @test isequal(ehp1, 0.5*prod(pval .* [0,1,1] + (1 .- pval) .* (1 .- [0,1,1]))) eh2 = "0 missing 1" ehp2 = Unmarked.get_prob_eh(Occu, eh2, pval, psi) - @test isequal(ehp2, 0.5*prod([0.2,0.3] .* [0,1] + @test isequal(ehp2, 0.5*prod([0.2,0.3] .* [0,1] + (1 .- [0.2,0.3]) .* (1 .- [0,1]))) #Test getting obs and expected counts oc = Unmarked.get_obs_counts(fit1, umd1) - @test isequal(length(oc), 5) - @test isequal(sum(collect(values(oc))), 10) - @test isequal(oc["0 0 0"], 6) + @test isequal(length(oc), 8) + @test isequal(sum(collect(values(oc))), 50) + @test isequal(oc["0 0 0"], 35) ec = Unmarked.get_exp_counts(fit1, umd1) @test isequal(keys(oc), keys(ec)) - @test isequal(round(ec["1 1 0"],digits=6), 0.468793) + @test isequal(round(ec["1 1 0"],digits=4), 2.2077) #Test chi-square calc - @test isequal(round(Unmarked.mb_chisq(fit1),digits=4), 3.0741) + @test isequal(round(Unmarked.mb_chisq(fit1),digits=4), 2.095) #with missing values - @test isequal(round(Unmarked.mb_chisq(fit2),digits=4), 3.6675) + @test isequal(round(Unmarked.mb_chisq(fit2),digits=4), 14.9232) #Test parametric bootstrap Random.seed!(123) gf = gof(fit1) @test isequal(length(gf.tstar), 50) - @test isequal(mean(gf.t0 .< gf.tstar), 0.72) + @test isequal(mean(gf.t0 .< gf.tstar), 0.86) gf2 = gof(fit2) - @test isequal(mean(gf2.t0 .< gf2.tstar), 0.86) - + @test isequal(mean(gf2.t0 .< gf2.tstar), 0.12) + end |