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All changes can be found here:
https://github.com/rbchan/unmarked/commits/master.
The following is just a summary.
Version 1.1.1
o Fix address sanitizer problems with multmixOpen
Version 1.1.0
o Add nmixTTD fitting function
o Add experimental random effects support and TMB engine to occu and pcount
o Add openMP support to some fitting functions (occuRN, gdistsamp, gmultmix, gpcount) for calculating likelihood in parallel
o Define STRICT_R_HEADERS in C++ code for compatibility with future Rcpp update
o Many bugfixes mainly related to predict()
Version 1.0.1
o Fix LTO mismatches
o Automatically convert characters to factors in unmarkedFrames
o Many bugfixes, mainly related to predict()
Version 1.0.0
o New functions 'distsampOpen' and 'multmixOpen' - open population versions of distsamp/gdistsamp and multinomPois/gmultmix
o Add 'predict' method for output from 'ranef', for generating posterior samples of the random effects and running a function on them
o Predict now correctly handles formulas containing functions and newdata with invalid factor levels
o Remove reshape2 dependency
o Bugfixes
Version 0.13-1.9000
o New 'makePiFun' function factories added to generate piFuns with required defaults
o 'plot' method for parboot now only "ask"s for new page when screen device is in use; restores former "ask" setting on exit.
Version 0.13-1
o Fixes for compatibility with R 4.0
Version 0.13-0
o New 'occuMS' function added for fitting multi-state occupancy models (single-season and dynamic)
o New 'occuTTD' function for fitting continuous time-to-detection occupancy models (single season and dynamic). Thanks to Jonathan Cohen for help with this
o New 'crossVal' function for doing cross-validation on fitted unmarked models and fitLists
o New 'vif' function for calculating variance inflation factors for fitted unmarked models
o Add ability to use complimentary-log-log link function in occu
o Add built-in dependent double observer pi function
o New C++ engines for gmultmix, gdistsamp, multinomPois, occuRN
o Approximate integrals in C++ engines with trapezoidal rule function instead of using Rdqags
o Misc minor bugfixes
Version 0.12-3
o New 'occuMulti' function added by Ken Kellner
Version 0.12-0
o Fixed mistake in turnover calculations in colext vignette (thanks
to Giacomo Tavecchia)
o added pcount.spHDS from AHM book.
o updated predict method for pcount to include ZIP model
o Adam Smith added some parallel capabilities to the parboot functionality
o Adam Smith fixed formatMult conversion of julian date to factor
o Auriel Fournier fixed formatDistData to pad data with NA
o fixed error in obsToY for custom pi function
Version 0.11-0
o Andy Royle is the new maintainer
o Added Rebecca Hutchinson's penalized likelihood function occuPEN
(experimental)
o fixed bug in gmultmix to accommodate mixed sampling protocols (NA
in count frequency vector is not counted in the constraint that
multinomial cell probabilities sum to 1)
o Changed variable 'ufp' to 'ufc' in ovenbird data and related functions.
o Removed constraint in pcountOpen that lambdaformula==omegaformula
o Fixed bug in gdistsamp that caused error when NAs were present in
half-normal model
o Fixed bug in ranef (it was giving an error message for pcountOpen with the
new dynamics options (Ricker and Gompertz) and working incorrectly for
pcountOpen with immigration)
o Fixed bug in pcountOpen that occurred when covariates were time
varying but not varying among sites
Version 0.10-6
o Fixed bug in C++ code that was causing problems on Solaris
Version 0.10-5
o Added new models of population dynamics to pcountOpen. Most
changes contributed by Jeff Hostetler.
Version 0.10-4
o Added importFrom("plyr", "ldply") to NAMESPACE because "reshape" no longer
depends on "plyr"
Version 0.10-3
o RcppArmadillo was moved from "Depends" section of DESCRIPTION file to
"LinkingTo"
Version 0.10-2
Bug fixes
o Thanks for Dirk Eddelbuettel for patch to deal with change in Armadillo's
in-place reshape function. Serious problems might occur if you use a recent
version of RcppArmadillo and an old version of unmarked.
o Dave Miller added another NA handling fix in occuFP(). I forgot to add
this one in the previous version.
Version 0.10-1
o Doc fixes requested by CRAN
Version 0.10-0
Bug fixes
o Fixed NA handling in occuFP()
o Fixed integration setting in C++ code that were causing segfaults
when calling distsamp
o Replace raster:::layerNames() with raster:::names()
New features
o distsamp() and gdistsamp() should be faster and more stable for
some keyfun/survey combinations
Version 0.12-0
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