diff options
Diffstat (limited to 'src/RcppExports.cpp')
| -rw-r--r-- | src/RcppExports.cpp | 57 |
1 files changed, 53 insertions, 4 deletions
diff --git a/src/RcppExports.cpp b/src/RcppExports.cpp index c69911a..6d89809 100644 --- a/src/RcppExports.cpp +++ b/src/RcppExports.cpp @@ -363,6 +363,55 @@ BEGIN_RCPP return rcpp_result_gen; END_RCPP } +// nll_occuMulti_loglik +arma::vec nll_occuMulti_loglik(Rcpp::IntegerVector fStart, Rcpp::IntegerVector fStop, arma::sp_mat dmF, Rcpp::List dmOcc, arma::colvec beta, Rcpp::List dmDet, Rcpp::IntegerVector dStart, Rcpp::IntegerVector dStop, arma::mat y, Rcpp::IntegerVector yStart, Rcpp::IntegerVector yStop, arma::mat Iy0, arma::mat z, Rcpp::LogicalVector fixed0); +RcppExport SEXP _unmarked_nll_occuMulti_loglik(SEXP fStartSEXP, SEXP fStopSEXP, SEXP dmFSEXP, SEXP dmOccSEXP, SEXP betaSEXP, SEXP dmDetSEXP, SEXP dStartSEXP, SEXP dStopSEXP, SEXP ySEXP, SEXP yStartSEXP, SEXP yStopSEXP, SEXP Iy0SEXP, SEXP zSEXP, SEXP fixed0SEXP) { +BEGIN_RCPP + Rcpp::RObject rcpp_result_gen; + Rcpp::RNGScope rcpp_rngScope_gen; + Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type fStart(fStartSEXP); + Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type fStop(fStopSEXP); + Rcpp::traits::input_parameter< arma::sp_mat >::type dmF(dmFSEXP); + Rcpp::traits::input_parameter< Rcpp::List >::type dmOcc(dmOccSEXP); + Rcpp::traits::input_parameter< arma::colvec >::type beta(betaSEXP); + Rcpp::traits::input_parameter< Rcpp::List >::type dmDet(dmDetSEXP); + Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type dStart(dStartSEXP); + Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type dStop(dStopSEXP); + Rcpp::traits::input_parameter< arma::mat >::type y(ySEXP); + Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type yStart(yStartSEXP); + Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type yStop(yStopSEXP); + Rcpp::traits::input_parameter< arma::mat >::type Iy0(Iy0SEXP); + Rcpp::traits::input_parameter< arma::mat >::type z(zSEXP); + Rcpp::traits::input_parameter< Rcpp::LogicalVector >::type fixed0(fixed0SEXP); + rcpp_result_gen = Rcpp::wrap(nll_occuMulti_loglik(fStart, fStop, dmF, dmOcc, beta, dmDet, dStart, dStop, y, yStart, yStop, Iy0, z, fixed0)); + return rcpp_result_gen; +END_RCPP +} +// nll_occuMulti +double nll_occuMulti(Rcpp::IntegerVector fStart, Rcpp::IntegerVector fStop, arma::sp_mat dmF, Rcpp::List dmOcc, arma::colvec beta, Rcpp::List dmDet, Rcpp::IntegerVector dStart, Rcpp::IntegerVector dStop, arma::mat y, Rcpp::IntegerVector yStart, Rcpp::IntegerVector yStop, arma::mat Iy0, arma::mat z, Rcpp::LogicalVector fixed0, double penalty); +RcppExport SEXP _unmarked_nll_occuMulti(SEXP fStartSEXP, SEXP fStopSEXP, SEXP dmFSEXP, SEXP dmOccSEXP, SEXP betaSEXP, SEXP dmDetSEXP, SEXP dStartSEXP, SEXP dStopSEXP, SEXP ySEXP, SEXP yStartSEXP, SEXP yStopSEXP, SEXP Iy0SEXP, SEXP zSEXP, SEXP fixed0SEXP, SEXP penaltySEXP) { +BEGIN_RCPP + Rcpp::RObject rcpp_result_gen; + Rcpp::RNGScope rcpp_rngScope_gen; + Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type fStart(fStartSEXP); + Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type fStop(fStopSEXP); + Rcpp::traits::input_parameter< arma::sp_mat >::type dmF(dmFSEXP); + Rcpp::traits::input_parameter< Rcpp::List >::type dmOcc(dmOccSEXP); + Rcpp::traits::input_parameter< arma::colvec >::type beta(betaSEXP); + Rcpp::traits::input_parameter< Rcpp::List >::type dmDet(dmDetSEXP); + Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type dStart(dStartSEXP); + Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type dStop(dStopSEXP); + Rcpp::traits::input_parameter< arma::mat >::type y(ySEXP); + Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type yStart(yStartSEXP); + Rcpp::traits::input_parameter< Rcpp::IntegerVector >::type yStop(yStopSEXP); + Rcpp::traits::input_parameter< arma::mat >::type Iy0(Iy0SEXP); + Rcpp::traits::input_parameter< arma::mat >::type z(zSEXP); + Rcpp::traits::input_parameter< Rcpp::LogicalVector >::type fixed0(fixed0SEXP); + Rcpp::traits::input_parameter< double >::type penalty(penaltySEXP); + rcpp_result_gen = Rcpp::wrap(nll_occuMulti(fStart, fStop, dmF, dmOcc, beta, dmDet, dStart, dStop, y, yStart, yStop, Iy0, z, fixed0, penalty)); + return rcpp_result_gen; +END_RCPP +} // nll_occuPEN double nll_occuPEN(arma::icolvec y, arma::mat X, arma::mat V, arma::colvec beta_psi, arma::colvec beta_p, Rcpp::IntegerVector nd, Rcpp::LogicalVector knownOcc, Rcpp::LogicalVector navec, arma::colvec X_offset, arma::colvec V_offset, double penalty); RcppExport SEXP _unmarked_nll_occuPEN(SEXP ySEXP, SEXP XSEXP, SEXP VSEXP, SEXP beta_psiSEXP, SEXP beta_pSEXP, SEXP ndSEXP, SEXP knownOccSEXP, SEXP navecSEXP, SEXP X_offsetSEXP, SEXP V_offsetSEXP, SEXP penaltySEXP) { @@ -500,7 +549,6 @@ END_RCPP RcppExport SEXP getDetVecs(void *, void *, void *, void *, void *); RcppExport SEXP getSingleDetVec(void *, void *, void *); -RcppExport SEXP nll_occuMulti(void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *); static const R_CallMethodDef CallEntries[] = { {"_unmarked_get_lik_trans", (DL_FUNC) &_unmarked_get_lik_trans, 2}, @@ -516,14 +564,15 @@ static const R_CallMethodDef CallEntries[] = { {"_unmarked_nll_nmixTTD", (DL_FUNC) &_unmarked_nll_nmixTTD, 13}, {"_unmarked_nll_occu", (DL_FUNC) &_unmarked_nll_occu, 11}, {"_unmarked_nll_occuMS", (DL_FUNC) &_unmarked_nll_occuMS, 15}, + {"_unmarked_nll_occuMulti_loglik", (DL_FUNC) &_unmarked_nll_occuMulti_loglik, 14}, + {"_unmarked_nll_occuMulti", (DL_FUNC) &_unmarked_nll_occuMulti, 15}, {"_unmarked_nll_occuPEN", (DL_FUNC) &_unmarked_nll_occuPEN, 11}, {"_unmarked_nll_occuRN", (DL_FUNC) &_unmarked_nll_occuRN, 10}, {"_unmarked_nll_occuTTD", (DL_FUNC) &_unmarked_nll_occuTTD, 17}, {"_unmarked_nll_pcount", (DL_FUNC) &_unmarked_nll_pcount, 11}, {"_unmarked_nll_pcountOpen", (DL_FUNC) &_unmarked_nll_pcountOpen, 35}, - {"getDetVecs", (DL_FUNC) &getDetVecs, 5}, - {"getSingleDetVec", (DL_FUNC) &getSingleDetVec, 3}, - {"nll_occuMulti", (DL_FUNC) &nll_occuMulti, 16}, + {"getDetVecs", (DL_FUNC) &getDetVecs, 5}, + {"getSingleDetVec", (DL_FUNC) &getSingleDetVec, 3}, {NULL, NULL, 0} }; 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