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authorlpautrel <lea.pautrel@terroiko.fr>2023-12-04 17:05:44 +0100
committerlpautrel <lea.pautrel@terroiko.fr>2023-12-04 17:05:44 +0100
commit591892700c69f343935fee52f6d37510d88bc9c3 (patch)
tree8f96627a201b33f41bbf7718d6f3d63b7fe68bca
parent1c466c2c5a0d07a19296e67e0cba742721d3c45b (diff)
Add COP to package metadata
-rw-r--r--DESCRIPTION1
-rw-r--r--NAMESPACE10
2 files changed, 7 insertions, 4 deletions
diff --git a/DESCRIPTION b/DESCRIPTION
index 5658925..762bbdf 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -54,6 +54,7 @@ Collate: 'classes.R' 'unmarkedEstimate.R' 'mapInfo.R' 'unmarkedFrame.R'
'goccu.R'
'RcppExports.R'
'zzz.R'
+ 'occuCOP.R'
LinkingTo:
Rcpp,
RcppArmadillo,
diff --git a/NAMESPACE b/NAMESPACE
index 3234918..3666be0 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -24,7 +24,7 @@ importFrom(pbapply, pbsapply, pblapply)
export(occu, occuFP, occuRN, pcount, pcountOpen, multinomPois, distsamp,
colext, gmultmix, gdistsamp, gpcount, occuPEN, occuPEN_CV, occuMulti,
occuMS, computeMPLElambda, pcount.spHDS, occuTTD, distsampOpen,
- multmixOpen, nmixTTD, gdistremoval, goccu)
+ multmixOpen, nmixTTD, gdistremoval, goccu, occuCOP)
export(removalPiFun, doublePiFun)
export(makeRemPiFun, makeCrPiFun, makeCrPiFunMb, makeCrPiFunMh)
@@ -40,7 +40,8 @@ exportClasses(unmarkedFit, unmarkedFitOccu, unmarkedFitOccuFP, unmarkedFitDS,
unmarkedFrameGPC, unmarkedEstimate, unmarkedFitList,
unmarkedModSel, unmarkedRanef, unmarkedFrameOccuMulti,
unmarkedFrameOccuMS, unmarkedFrameGDR, unmarkedCrossVal,
- unmarkedPostSamples, unmarkedPower, unmarkedPowerList)
+ unmarkedPostSamples, unmarkedPower, unmarkedPowerList,
+ unmarkedFrameCOP, unmarkedFitCOP)
# Methods
exportMethods(backTransform, coef, confint, coordinates, fitted, getData,
@@ -51,7 +52,8 @@ exportMethods(backTransform, coef, confint, coordinates, fitted, getData,
"siteCovs<-", summary, update, vcov, yearlySiteCovs,
"yearlySiteCovs<-", "[", smoothed, projected, nonparboot, logLik,
LRT, ranef, bup, crossVal, posteriorSamples, sigma, randomTerms,
- optimizePenalty, unmarkedPowerList, plotEffectsData, plotEffects)
+ optimizePenalty, unmarkedPowerList, plotEffectsData, plotEffects,
+ getL)
S3method("print", "unmarkedPostSamples")
@@ -61,7 +63,7 @@ export(unmarkedEstimate, fitList, mapInfo, unmarkedFrame,
unmarkedFrameDS, unmarkedMultFrame, unmarkedFrameGMM,
unmarkedFramePCO, unmarkedFrameGDS, unmarkedFrameGPC, unmarkedFrameOccuMulti,
unmarkedFrameOccuMS, unmarkedFrameOccuTTD, unmarkedFrameDSO,
- unmarkedFrameMMO, unmarkedFrameGDR, unmarkedFrameGOccu)
+ unmarkedFrameMMO, unmarkedFrameGDR, unmarkedFrameGOccu, unmarkedPostSamples)
# Formatting
export(csvToUMF, formatLong, formatWide, formatMult, formatDistData)