diff options
| author | Ken Kellner <ken@kenkellner.com> | 2023-07-27 13:27:32 -0400 |
|---|---|---|
| committer | Ken Kellner <ken@kenkellner.com> | 2023-07-27 13:27:32 -0400 |
| commit | a0bb14f8b1b3d4fbc59df6a02dca7553a2f5b319 (patch) | |
| tree | 23799a0701b146b3baeaa2a0c97c44c3dd47365a | |
| parent | 05d0bb40969e25b88b68ac78a1301ad37f4fb8c8 (diff) | |
Fix introduced bug with NB
| -rw-r--r-- | R/gdistsamp.R | 10 |
1 files changed, 4 insertions, 6 deletions
diff --git a/R/gdistsamp.R b/R/gdistsamp.R index 2c09bbf..c43076a 100644 --- a/R/gdistsamp.R +++ b/R/gdistsamp.R @@ -2,7 +2,7 @@ gdistsamp <- function(lambdaformula, phiformula, pformula, data, keyfun=c("halfnorm", "exp", "hazard", "uniform"), output=c("abund", "density"), unitsOut=c("ha", "kmsq"), - mixture=c('P', 'NB', 'ZIP'), K, starts, method = "BFGS", se = TRUE, engine=c("C","R"), + mixture=c("P", "NB", 'ZIP'), K, starts, method = "BFGS", se = TRUE, engine=c("C","R"), rel.tol=1e-4, threads=1, ...) { if(!is(data, "unmarkedFrameGDS")) @@ -111,15 +111,13 @@ else { if(identical(mixture, "NB")) { nOP <- 1 nbPar <- "alpha" - } -if(identical(mixture, "ZIP")) { +} else if(identical(mixture, "ZIP")) { nOP <- 1 nbPar <- "psi" - } -else { +} else { nOP <- 0 nbPar <- character(0) - } +} nLP <- ncol(Xlam) nP <- nLP + nPP + nDP + nSP + nOP |