Package: ubms
Version: 1.2.6
Date: 2023-09-11
Title: Bayesian Models for Data from Unmarked Animals using 'Stan'
Authors@R: person("Ken", "Kellner", email="contact@kenkellner.com", 
                  role=c("cre","aut"))
Depends: 
    R (>= 3.4.0),
    unmarked
Imports:
    ggplot2 (>= 2.0.0),
    gridExtra,
    lme4,
    loo,
    Matrix (>= 1.5-0),
    methods,
    pbapply,
    Rcpp (>= 0.12.0),
    rlang,
    RSpectra,
    rstan (>= 2.26.0),
    rstantools (>= 2.0.0),
    stats
Suggests: covr, devtools, knitr, pkgdown, raster, rmarkdown, roxygen2, testthat
VignetteBuilder: knitr
Description: Fit Bayesian hierarchical models of animal abundance and occurrence
    via the 'rstan' package, the R interface to the 'Stan' C++ library.
    Supported models include single-season occupancy, dynamic occupancy, and
    N-mixture abundance models. Covariates on model parameters are specified
    using a formula-based interface similar to package 'unmarked', while also
    allowing for estimation of random slope and intercept terms. References:
    Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>;
    Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.
License: GPL (>=3)
URL: https://kenkellner.com/ubms/
BugReports: https://github.com/kenkellner/ubms/issues
Encoding: UTF-8
RoxygenNote: 7.2.2
Biarch: true
LinkingTo: 
    BH (>= 1.66.0),
    Rcpp (>= 0.12.0),
    RcppArmadillo (>= 0.9.300.2.0),
    RcppEigen (>= 0.3.3.3.0),
    rstan (>= 2.26.0),
    StanHeaders (>= 2.26.0),
    RcppParallel (>= 5.0.2)
SystemRequirements: GNU make
Collate: 
    'RcppExports.R'
    'submodel.R'
    'response.R'
    'inputs.R'
    'fit.R'
    'posterior_predict.R'
    'posterior_linpred.R'
    'fitted.R'
    'gof.R'
    'occu.R'
    'colext.R'
    'missing.R'
    'distsamp.R'
    'fitlist.R'
    'kfold.R'
    'occuTTD.R'
    'multinomPois.R'
    'occuRN.R'
    'pcount.R'
    'loglik.R'
    'mb_chisq.R'
    'plot_effects.R'
    'plot_posteriors.R'
    'predict.R'
    'priors.R'
    'ranef.R'
    'residuals.R'
    'spatial.R'
    'stanmodels.R'
    'test-helpers.R'
    'ubms-package.R'
    'ubmsFit-methods.R'
    'ubmsFitList-methods.R'
    'umf.R'
    'utils.R'